Investigation molecular mechanism of sensitive and tolerant barley cultivars under different times of salinity stress exposure using proteome analysis

Subject Areas : Plant Physiology

Mohammad Reza Naghavi ¹ , Marouf Khalili ² , Abolfazl Tavassoli ³ , Fatemeh Rastegaripour ⁴

1 - Assistant Professor, Agriculture Department, Payame Noor University, Iran
2 - Associate Professor, Department of Agriculture, Payame Noor University (PNU), Iran
3 - Assistant Professor, Agriculture Department, Payame Noor University, Iran
4 - Assistant Professor, Department of agriculture, University of Torbat Heydarieh

Received: 2021-06-25 Accepted : 2021-11-08 Published : 2022-06-01

Keywords:

References:

Abdi, N., S.Wasti, A. Slama, M. B. Salem, M. E. Faleh, and E. Mallek-Maalej. 2016. Comparative Study of Salinity Effect on Some Tunisian Barley Cultivars at Germination and Early Seedling Growth Stages. Journal of Plant Physiology & Pathology, 4:3-15.

Aghaei, K., A. A. Ehsanpour, and S. Komatsu. 2008. Proteome analysis of potato under salt stress. Journal Proteome Research, 7:4858-4868.

Al-Karaki, G. N. 2001. Germination, sodium, and potassium concentrations of barley seeds as influenced by salinity. Journal of Plant Nutrition, 24:511-522.

Albertin, W., O. Langella, J. Joets, L. Negroni, M. Zivy, C. Damerval, and H. Thiellement. 2009. Germination, sodium, and potassium concentrations of barley seeds as influenced by salinity. Proteomics, 9:793-799.

Babakov, A. V., V. V. Chelysheva, O. I. Klychnikov, S. E. Zorinyanz, M. S. Trofimova, and A. H. de Boer. 2000. Involvement of 14-3-3 proteins in the osmotic regulation of H+- ATPase in plant plasma membranes. Planta, 211:446-448.

Boehlein, S. K., A. K. Sewell, J. Cross, J. D. Stewart, and L. C. Hannah. 2005. Purification and characterization of adenosine diphosphate glucose pyrophosphorylase from maize/potato mosaics. Plant Physiology, 138:1552-1562.

Borland, A., S. Elliott, S. Patterson, T. Taybi, J. Cushman, B. Pater, and J. J. Barnes. 2006. Are the metabolic components of crassulacean acid metabolism up-regulated in response to an increase in oxidative burden? Experimental Botany, 57:319-328.

Bradford, M. M. 1976. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Analytical Biochemistry, 72:248-254.

Cakmak, I. 2005. The role of potassium in alleviating detrimental effects of abiotic stresses in plants. Journal of Plant Nutrition Soil Science, 168:521-530.

Caruso, G., C. Cavaliere, C. Guarino, R. Gubbiotti, P. Foglia, and A. Lagana. 2008. Identification of changes in Triticum. durum L. leaf proteome in response to salt stress by two-dimensional electrophoresis and MALDI-TOF mass spectrometry. Analytical and Bioanalytical Chemistry, 391:381-390.

Cheng, Y., Y. Qi, Q. Zhu, X. Chen, N. Wang, X. Zhao, H. Chen, X. Cui, L. Xu, and W. Zhang. 2009. New changes in the plasma-membrane-associated proteome of rice roots under salt stress. Proteomics, 9:3100-3114.

El Kasmi, F., C. Krause, U. Hiller, Y. D. Stierhof, U. Mayer, L. Conner, L. Kong, I. Reichardt, A. A. Sanderfoot, and G. Jürgens. 2013. SNARE complexes of different composition jointly mediate membrane fusion in Arabidopsis cytokinesis. Molecular Biology of the Cell, 24:1593-1601.

Fatehi, F., A. Hosseinzadeh, H. Alizadeh, T. Brimavandi, and P. C. Struik. 2012. The proteome response of salt-resistant and salt-sensitive barley genotypes to long-term salinity stress. Molecular Biology Reports, 39:6387-6397.

Fischer, G., B. Wittmann-Liebold, K. Lang, T. Kiefhaber, and F. X. Schmid. 1989. Cyclophilin and peptidyl-prolyl cistrans isomerase are probably identical proteins. Nature, 337:476-478.

Ganeteg, U., A. Strand, P. Gustafsson, and S. Jansson. 2001. The properties of the chlorophyll a/b binding proteins Lhca2 and Lhca3 studied in vivo using antisense inhibition. Plant Physiology, 127:150-158.

Guan, H. P., and P. L. Keeling. 1998. Starch Biosynthesis: Understanding the functions and interactions of multiple isoenzymes of starch synthase and branching enzyme. Trends in Glycoscience and Glycotechnology, 10:307-319.

Guo, G., P. Ge, , C. Ma, X. Li, D. Lv, S. Wang, W. Ma, and Y. Yan. 2012. Comparative proteomic analysis of salt response proteins in seedling roots of two wheat varieties. Journal of Proteomics, 75:1867-1885.

Hashiguchi, A., N. Ahsan, and S. Komatsu. 2010. Proteomics application of crops in context of climatic changes. Food Research International, 43:1803-1813.

Hashimoto, M., M. Toorchi, K. Matsushita, Y. Iwasaki, and S. Komatsu. 2009. Proteome analysis of rice root plasma membrane and detection of cold stress responsive proteins. Protein and Peptide Letters, 16:685-697.

Heide, H., H. M. Kalisz, and H. Follmann. 2004. The oxygen evolving enhancer protein 1 (OEE) of photosystem II in green algae exhibits thioredoxin activity. Journal of Plant Physiology, 161:139-149.

 Ifuku, K., S. Ishihara, S. Shimamoto, K. Ido, and F. Sato. 2008. Structure, function, and evolution of the PsbP protein family in higher plants. Photosynthesis Research, 98:427-437.

Ifuku, K., T. Nakatsu, R. Shimamoto, Y. Yamamoto, S. Ishihara, H. Kato, and F. Sato. 2005. Structure and function of the PsbP protein of photosystem II from higher plants. Photosynthesis Research, 84:251-255.

Joseph, B., and D. Jini. 2010. Proteomic analysis of salinity stress-responsive proteins in plants. Asian Journal of Plant Science, 9:307-313.

Kausar, R., M. Arshad, A. Shahzad, and S. Komatsu. 2013. Proteomics analysis of sensitive and tolerant barley genotypes under drought stress. Amino Acids, 44:345-359.

Khalili, M., A. Pour-Aboughadareh,and M. R. Naghavi. 2013. Screening of drought tolerant cultivars in barley using morpho-physiological traits and Integrated Selection Index under water deficit stress condition. Environmental and Experimental Biology, 14:33-41.

Kidou, S., M. Umeda, A. Kato, and H. Uchimiya. 1993. Isolation and characterization of a rice cDNA similar to the bovine brain-specific 14-3-3 protein gene. Plant Molecular Biology, 21:191-194.

Komatsu, S., A. H. M. Kamal, and Z. Hossain. 2014. Wheat proteomics: proteome modulation and abiotic stress acclimation. Frontiers in Plant Science, 5:684-689.

Komatsu, S., and N. Tanaka. 2004. Rice proteome analysis: A step toward functional analysis of the rice genome. Proteomics, 4:938-949.

Li, Q., J. Liu, D. Tan, A. C. Allan, Y. Jiang, X. Xu, Z. Han, and J. Kong. 2013. A genome-wide expression profile of salt-responsive genes in the apple rootstock. International Journal of Molecular Sciences, 14:21053-21070.

Liu, G., L. Ma, W. Duan, B. Wang, J. H. Li, H. G. Xu, X. Q. Yan, B. F. Yan, S. H. Li, and L. J. Wang. 2014. Differential proteomic analysis of grapevine leaves by iTRAQ reveals responses to heat stress and subsequent recovery. BMC Plant Biology, 4:110-119.

Martinez, J. P., L. Stanley, and A. Schanck. 2004. Is osmotic adjustment required for water stress resistance in the Mediterranean shrub Atriplex halimus L.? Journal of Plant Physiology, 161:1041-1051.

McEvoy, J. P., and Brudvig, G. W. 2006. Brudvig Water-splitting chemistry of photosystem II. Chemical Reviews, 106: 4455-4483.

Michaletti, A., M. R. Naghavi, M. Toorchi, L. Zolla, and S. Rinalducci. 2018. Metabolomics and proteomics reveal drought-stress responses of leaf tissues from spring-wheat. Scientific Report, 8: 5710.

Nelson, N., and C. F. Yocum. 2006. Structure and function of photosystem I and II. Annual Review of Plant Biology, 57:521-565.

Peng, Z., M. Wang, F. Li, H. Lv, C. Li, and G. Xia. 2009. The proteome of maize leaves: use of gene sequences and expressed sequence tag data for identification of proteins with peptide mass fingerprints. Molecular and Cellular Proteomics, 8:2676-2686.

Sharma, R., De D. Vleesschauwer, M. K. Sharma, and P. C. Ronald. 2013. Recent advances in dissecting stress-regulatory crosstalk in rice. Molecular Plant, 6:250-260.

Spreitzer, R. J., and M. E. Salvucci. 2002. Rubisco: structure, regulatory interactions, and possibilities for a better enzyme. Annual Review of Plant Biology, 53:449-475.

Sun, Y., R. A. Ahokas, S. K. Bhattacharya, I. C. Gerling, L. D. Carbone, and K. T. Weber. 2006. Oxidative stress in aldosteronism. Cardiovascular Research, 71:300-309.

Tanaka, N., S. Mitsui, H. Nobori, K. Yanagi, and S. Komatsu. 2005. Expression and function of proteins during development of the basal region in rice seedlings. Molecular and Cellular Proteomics, 4:796-808.

Toorchi, M., K. Yukawa, M. Z. Nouri, and S. Komatsu. 2009. Proteomics approach for identifying osmotic-stress-related proteins in soybeans roots. Peptides, 30:2108-2117.

Von Ballmoos, C., and P. Dimroth. 2007. Two distinct proton binding sites in the ATP synthase family. Biochemistry, 46:11800-11809.

Wan, X.Y., and J. Y. Liu. 2008. Comparative proteomics analysis reveals an intimate protein network provoked by hydrogen peroxide stress in rice seedling leaves. Molecular and Cellular Proteomics, 7:1469-1488.

Wang, W., B. Vinocur, O. Soseyov, and A. Altman. 2004. Role of plant heat-shock proteins and molecular chaperones in the abiotic stress response. Trends in Plant Science, 9:244-252.

Wang, X., P. Fan, H. Song, X. Chen, X. Li, and Y. Li. 2009. Comparative proteomic analysis of differentially expressed proteins in shoots of Salicornia europaea under different salinity. Journal of Proteome Research, 8:3331-3345.

Yadav, S. K., S. L. Singla-Pareek, M. Ray, M. K. Reddy, and S. K. Sopory. 2005. Methylglyoxal levels in plants under salinity stress are dependent on glyoxalase I and glutathione. Biochemical and Biophysical Research Communications, 337:61-67.

Zellerhoff, N. A., A. Himmelbach, W. B. Dong, S. Bieri, U. Schaffrath, and P. Schweizer. 2010. Nonhost resistance of barley to different fungal pathogens is associated with largely distinct, quantitative transcriptional responses. Plant Physiology, 152:2053-2066.

Zhang, L., S. Xiao, W. Li, W. Feng, J. Li, Z. Wu, X. Gao, F. Liu, and M. Shao. 2011. Overexpression of a Harpin-encoding genehrf1 in rice enhances drought tolerance. Journal of Experimental Botany, 62:4229-4238.