مقایسه ساختار و تنوع ژنتیکی اردک سرحنائی( Aythya ferina) با استفاده از ژن میتوکندریایی سیتوکروم ب در مناطق شمالی و جنوبی ایران
الموضوعات :
شبنم چاوشی
1
,
جلیل ایمانی
2
,
حمید رضا رضایی
3
,
پرگل قوام مصطفوی
4
1 - دکتری محیط زیست، گرایش تنوع زیستی، دانشکده منابع طبیعی و محیط زیست، واحد علوم و تحقیقات، دانشگاه آزاد اسلامی، تهران، ایران.
2 - استادیار دانشکده منایع طبیعی و محیط زیست، واحد علوم و تحقیقات، دانشگاه آزاد اسلامی، تهران، ایران. *(مسوول مکاتبات)
3 - دانشیار دانشگاه علوم کشاورزی و منابع طبیعی، گرگان، ایران.
4 - استادیار دانشکده منابع طبیعی و محیط زیست، واحد علوم و تحقیقات، دانشگاه آزاد اسلامی، تهران، ایران.
تاريخ الإرسال : 13 الأحد , ذو القعدة, 1443
تاريخ التأكيد : 14 السبت , صفر, 1444
تاريخ الإصدار : 29 الثلاثاء , شعبان, 1444
الکلمات المفتاحية:
ژنوم میتوکندری,
تنوع ژنتیکی,
اردک سرحنائی,
ژن سیتوکروم b,
ملخص المقالة :
زمینه و هدف: اردک سرحنائی ( Aythya ferina) یکی از گونه های فراوان و با پراکندگی بالا در جهان، بین مرغابی سانان است. هدف از انجام پژوهش حاضر بررسی ساختار و تنوع ژنتیکی این گونه در ایران با استفاده از ژن سیتوکروم ب( Cytochrome b) بوده است.
روش بررسی: در این پژوهش نمونه برداری از 10 قطعه اردک سرحنائی که از مناطق شمال و جنوب کشور در سالهای 1399- 1400 برداشت شده بودند، انجام شد. پس از استخراج و تکثیر قطعات DNA تجزیه تحلیل های هاپلوتایپی و نوکلئوتیدی صورت گرفت.
یافته ها: به طور کلی، با بررسی 8 قطعه 929 جفت بازی ژن سیتوکروم b اردک سرحنائی، 7 هاپلوتایپ مختلف شناسائی شد. تنوع هاپلو تایپی 818/0، تنوع نوکلئوتیدی 00149/0 محاسبه شد. مقدار Nm یا میزان جریان ژنی بین منطق نمونه برداری برابر 383/1 بود که نشان از جریان ژنی بالا و به بیان دیگر فاصله ژنی بسیار کم بین جمعیت های این گونه و جمعیت های اروپایی و آسیایی آن است. شاخص راجرز- هارپندینگ، شاخص تاجیما و Fu Fs به ترتیب 112/0، 028/0- و 288/1- محاسبه شد، همچنین نمودار توزیع عدم تطابق به صورت تک نمائی رسم شده، که همه آنها نشان دهنده تاریخچه جمعیتی نامعین و شبیه به مدل گسترش ناگهانی بوده است.
بحث و نتیجه گیری: با توجه به نتایج به دست آمده از شبکه هاپلوتایپی و درخت تبار شناختی و همین طور تفاوت اندک ژنتیکی بین جمعیتهای بررسی شده، احتمال مهاجرت این پرنده از هر دو منطقه اروپا و شرق آسیا به ایران وجود دارد. با در نظر گرفتن نتایج پژوهش حاضر، باید تالاب های زیستگاهی این گونه در ایران به عنوان مناطق مهم و کلیدی شناخته شده و اقدامات مدیریتی و حفاظتی لازم در این مناطق صورت گیرد.
المصادر:
Mansori, J., 2008. Ornithology, First Edition, Farzaneh Book Publishing, pp:114-118. (In persian)
Dayan, K., 1988. Birds of the Middle orient and the Near orient, First edition, University of Tehran Press, pp:63-65. (In persian)
Ahmadpour, M., Lan-Hai, L., Ahmadpour, M. et al. (2016). Mercury concentration in the feathers of birds from various trophic levels in Fereydunkenar International wetland (Iran). Environ Monit Assess 188, 666 (2016). https://doi.org/10.1007/s10661-016-5671-y
Nafiseh Momeni, Hamid Reza Rezaei, Mohsen Ahmadpour, Paul Hapeman, (2022). Mitochondrial DNA cytochrome b diversity and phylogeny of the Eurasian coot (Fulica atra; Linnaeus, 1758) (Gruiformes: Rallidae), Journal of Wildlife and Biodiversity: 6 (2): 22-34.
Yang Liu, Irene Keller, and Gerald Heckel, 2011. Range-wide genetic population structure of common pochard (Aythya ferina): a potentially important vector of highly pathogenic avian influenza viruses Ecol Evol. Dec; 1(4): 529–545
J.M. Amezaga, L. antamaría, A.J. Green, 2002. Biotic wetland connectivity—supporting a new approach for wetland policy Acta Oecologica 23; 213–222
Madsen, T.; Olsson, M.; Wittzell, H.; Stille, B.; Gullberg, A.; Shine, R.; Andersson, S.and Tegelstro, H., 2000. Population size and genetic diversity in sand lizards (Lacerta agilis) and adders (Vipera berus). Biological Conservation. 94: 257-262.
Mohammadabadi, M.R.; Nikbakhti, M.; Mirzaee, H.R.; Shandi, A.; Saghi, D.A.; Romanov, M.N. and Moiseyeva, I.G., 2010. Genetic variability in three native Iranian chicken populations of the Khorasan province based on microsatellite markers. Russian journal of genetics. Vol. 46, No. 4, pp: 505-509.
Askari, N.; Abadi, M.R.M. and Baghizadeh. A., 2011. ISSR markers for assessing DNA polymorphism and genetic characterization of cattle, goat and sheep populations. Iranian Journal of Biotechnology. Vol. 9, pp: 222-229.
Thorp, J. P., 1982. The molecular clock hypothesis: Biochemical evolution, genetic differentiation and systematic. Annual Review of Ecology and Systematics; vol. 13, pp. 139-168.
Moazeni, S.; Mohammadabadi, M.R.; Sadeghi, M.; Shahrbabak, H.; Koshkoieh, A. and Bordbar, F., 2016. Association between UCP Gene Polymorphisms and Growth, Breeding Value of Growth and Reproductive Traits in Mazandaran Indigenous Chicken. Open Journal of Animal Sciences. Vol. 6, No. 1, pp: 1-8.
Friland, J., 2005. Molocular ecology. Jahad university publishers, Mashhad. Iran. pp:44-67
Gunter, K., 2009. The dictionary of gene Technology Genomies. Transcription protemics, wiley-vch Verlag GmbH and Co. KgaA, Weinheim. 1862 P
Bataillon, T.M., David, J.L., Schoen, D.J., 1996. Neutral genetic markers and conservation: simulated germplasm collections. Genetics; vol. 144, pp: 409-417.
Jahn, A.E.; Levey, D.J.; Farias, I.P.; Mamani, A.M.; Vidoz, J.Q. and Freeman, B., 2010. Morphological and genetic variation between migratory and non-migratory Tropical Kingbirds during spring migration in central South America. The Wilson Journal of Ornithology. Vol. 122, No.5, pp: 236-243.
Zwartjes, P.W., 2001. Genetic structuring among migratory populations of the black-whiskered vireo, with a comparison to the red-eyed vireo. The Condor. Vol. 103, No. 3, pp:439-448.
Haig, S.M.; Rhymer, J.M. and Heckel, D.G., 1994.Population differentiation in randomly mplified polymorphic DNA of red‐cockaded woodpeckers Picoides borealis. Molecular Ecology. Vol. 3, No. 6, pp: 581-595.
Nabholz, B.; Mauffrey, J.F.; Bazin, E.; Galtier, N. and Glemin, S., 2008. Determination of mitochondrial genetic diversity in mammals. Genetics. Vol. 178, No. 1, pp: 351-361.
Avise, J.C.; Arnold, J.; Ball, R.M.; Bermingham, E.; Lamb, T.; Neigel, J.E.; Reeb, C.A. and Saunders, N.C.,1987. Intraspecific phylogeography: the mitochondrial DNA bridge between population genetics and systematics. Annual review of ecology and systematics. pp: 489-552.
Hurst, G.D.D. and Jiggins, F.M., 2005. Problems with mitochondrial DNA as a marker in pulation, phylogeographic and phylogenetic studies: the effects of inherited symbionts. Proceedings of the Royal Society of London B: Biological Sciences. Vol. 272, No. 1572, pp:1525-1534.
Johnson, K.P. and Sorenson, M.D., 1998. Comparing molecular evolution in two mitochondrial protein coding genes (cytochrome b and ND5) in the dabbling ducks (Tribe: Anatini). Molecular phylogenetics and evolution. Vol. 10, No. 1, pp: 82-94.
Zardoya, R. and Meyer, A., 1996. Phylogenetic performance of mitochondrial protein-coding genes in resolving relationships among vertebrates. Molecular biology and evolution. Vol. 09, No. 8, pp: 399-315.
Johnson, K.P. and Sorenson, M.D., 1989. Comparing molecular evolution in two mitochondrial protein coding genes (cytochrome b and ND5) in the dabbling ducks (Tribe: Anatini). Molecular phylogenetics and evolution. Vol. 10, No. 1, pp: 82-94.
Bakhtiari, S.2000. Geological Atlas of Iranian Provinces, Tehran: Institute of Geography and Cartography.
Kiabi, B.; GHaemi, B., and Abdoli, Am., 1989. Wetland and river ecosystems of Golestan province. Administration Environmental protection of Golestan province. 182 pages.
Nei, M. and Kumar S., 2000. Molecular evolution and phylogenetics. Oxford University Press, New York.
Tamura, K. and Nei, M., 1993. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Molecular biology and evolution. Vol. 10, No. 3, pp: 512-526.
Kumar, S., Stecher, G. and Tamura, K., 2016 MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets. Molecular Biology and Evolution, 33, 1870-1874.
Tajima, F., 1989. Statistical-method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics. Vol., 123 pp: 585-595.
Fu, Y.X., 1997. Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics. Vol. 147, pp: 915-925
Avise, J.C.; Nelson, W.S. and Sibley, C.G., 1994. DNA sequence support for a close phylogenetic relationship between some storks and New World vultures. Proceedings of the National Academy of Sciences of the United States of America. Vol. 91, No. 11, pp:5173-5177.
Liu, Y.; Keller, I. and Heckel, G., 2012. Breeding site fidelity and winter admixture in a long-distance migrant, the tufted duck (Aythya fuligula). Heredity. Vol 109, No. 2, pp: 108-116.
Keller, I.; Korner-Nievergelt, F. and Jenni. L., 2009. Within-winter movements: acommon phenomenon in the Common Pochard Aythya ferina. Journal of Ornithology. Vol. 150, No. 2, pp:483-494
He, H.; Yuan, X.; Wei, C. and Yuan, F., 2006. Genetic variation of the Mmitochondrial ND1 region among geographical populations of Sitodiplosis mosellana (Gehin) (Diptera: Cecidomyiidae) in China. Journal of Kansas Entomology Society. Vol. 79, pp: 211-222.
Rogers, A.R., and Harpending, H., 1992. Population growth makes waves in the distribution of pairwise genetic differences. Molecular Biology and Evolution. Vol. 9, No. 3, pp: 552-569.
Ramos-Onsins, S.E. and Rozas, J., 2002. Statistical properties of new neutrality tests against population growth. Molecular biology and evolution. Vol. 19, No. 12, pp: 2092-2100.
Gonzalez, J.; Düttmann, H. and Wink, M., 2009. Phylogenetic relationships based on two mitochondrial genes and hybridization patterns in Anatidae. Journal of Zoology. Vol.279., No. 3, pp: 310-317.
_||_
Mansori, J., 2008. Ornithology, First Edition, Farzaneh Book Publishing, pp:114-118. (In persian)
Dayan, K., 1988. Birds of the Middle orient and the Near orient, First edition, University of Tehran Press, pp:63-65. (In persian)
Ahmadpour, M., Lan-Hai, L., Ahmadpour, M. et al. (2016). Mercury concentration in the feathers of birds from various trophic levels in Fereydunkenar International wetland (Iran). Environ Monit Assess 188, 666 (2016). https://doi.org/10.1007/s10661-016-5671-y
Nafiseh Momeni, Hamid Reza Rezaei, Mohsen Ahmadpour, Paul Hapeman, (2022). Mitochondrial DNA cytochrome b diversity and phylogeny of the Eurasian coot (Fulica atra; Linnaeus, 1758) (Gruiformes: Rallidae), Journal of Wildlife and Biodiversity: 6 (2): 22-34.
Yang Liu, Irene Keller, and Gerald Heckel, 2011. Range-wide genetic population structure of common pochard (Aythya ferina): a potentially important vector of highly pathogenic avian influenza viruses Ecol Evol. Dec; 1(4): 529–545
J.M. Amezaga, L. antamaría, A.J. Green, 2002. Biotic wetland connectivity—supporting a new approach for wetland policy Acta Oecologica 23; 213–222
Madsen, T.; Olsson, M.; Wittzell, H.; Stille, B.; Gullberg, A.; Shine, R.; Andersson, S.and Tegelstro, H., 2000. Population size and genetic diversity in sand lizards (Lacerta agilis) and adders (Vipera berus). Biological Conservation. 94: 257-262.
Mohammadabadi, M.R.; Nikbakhti, M.; Mirzaee, H.R.; Shandi, A.; Saghi, D.A.; Romanov, M.N. and Moiseyeva, I.G., 2010. Genetic variability in three native Iranian chicken populations of the Khorasan province based on microsatellite markers. Russian journal of genetics. Vol. 46, No. 4, pp: 505-509.
Askari, N.; Abadi, M.R.M. and Baghizadeh. A., 2011. ISSR markers for assessing DNA polymorphism and genetic characterization of cattle, goat and sheep populations. Iranian Journal of Biotechnology. Vol. 9, pp: 222-229.
Thorp, J. P., 1982. The molecular clock hypothesis: Biochemical evolution, genetic differentiation and systematic. Annual Review of Ecology and Systematics; vol. 13, pp. 139-168.
Moazeni, S.; Mohammadabadi, M.R.; Sadeghi, M.; Shahrbabak, H.; Koshkoieh, A. and Bordbar, F., 2016. Association between UCP Gene Polymorphisms and Growth, Breeding Value of Growth and Reproductive Traits in Mazandaran Indigenous Chicken. Open Journal of Animal Sciences. Vol. 6, No. 1, pp: 1-8.
Friland, J., 2005. Molocular ecology. Jahad university publishers, Mashhad. Iran. pp:44-67
Gunter, K., 2009. The dictionary of gene Technology Genomies. Transcription protemics, wiley-vch Verlag GmbH and Co. KgaA, Weinheim. 1862 P
Bataillon, T.M., David, J.L., Schoen, D.J., 1996. Neutral genetic markers and conservation: simulated germplasm collections. Genetics; vol. 144, pp: 409-417.
Jahn, A.E.; Levey, D.J.; Farias, I.P.; Mamani, A.M.; Vidoz, J.Q. and Freeman, B., 2010. Morphological and genetic variation between migratory and non-migratory Tropical Kingbirds during spring migration in central South America. The Wilson Journal of Ornithology. Vol. 122, No.5, pp: 236-243.
Zwartjes, P.W., 2001. Genetic structuring among migratory populations of the black-whiskered vireo, with a comparison to the red-eyed vireo. The Condor. Vol. 103, No. 3, pp:439-448.
Haig, S.M.; Rhymer, J.M. and Heckel, D.G., 1994.Population differentiation in randomly mplified polymorphic DNA of red‐cockaded woodpeckers Picoides borealis. Molecular Ecology. Vol. 3, No. 6, pp: 581-595.
Nabholz, B.; Mauffrey, J.F.; Bazin, E.; Galtier, N. and Glemin, S., 2008. Determination of mitochondrial genetic diversity in mammals. Genetics. Vol. 178, No. 1, pp: 351-361.
Avise, J.C.; Arnold, J.; Ball, R.M.; Bermingham, E.; Lamb, T.; Neigel, J.E.; Reeb, C.A. and Saunders, N.C.,1987. Intraspecific phylogeography: the mitochondrial DNA bridge between population genetics and systematics. Annual review of ecology and systematics. pp: 489-552.
Hurst, G.D.D. and Jiggins, F.M., 2005. Problems with mitochondrial DNA as a marker in pulation, phylogeographic and phylogenetic studies: the effects of inherited symbionts. Proceedings of the Royal Society of London B: Biological Sciences. Vol. 272, No. 1572, pp:1525-1534.
Johnson, K.P. and Sorenson, M.D., 1998. Comparing molecular evolution in two mitochondrial protein coding genes (cytochrome b and ND5) in the dabbling ducks (Tribe: Anatini). Molecular phylogenetics and evolution. Vol. 10, No. 1, pp: 82-94.
Zardoya, R. and Meyer, A., 1996. Phylogenetic performance of mitochondrial protein-coding genes in resolving relationships among vertebrates. Molecular biology and evolution. Vol. 09, No. 8, pp: 399-315.
Johnson, K.P. and Sorenson, M.D., 1989. Comparing molecular evolution in two mitochondrial protein coding genes (cytochrome b and ND5) in the dabbling ducks (Tribe: Anatini). Molecular phylogenetics and evolution. Vol. 10, No. 1, pp: 82-94.
Bakhtiari, S.2000. Geological Atlas of Iranian Provinces, Tehran: Institute of Geography and Cartography.
Kiabi, B.; GHaemi, B., and Abdoli, Am., 1989. Wetland and river ecosystems of Golestan province. Administration Environmental protection of Golestan province. 182 pages.
Nei, M. and Kumar S., 2000. Molecular evolution and phylogenetics. Oxford University Press, New York.
Tamura, K. and Nei, M., 1993. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Molecular biology and evolution. Vol. 10, No. 3, pp: 512-526.
Kumar, S., Stecher, G. and Tamura, K., 2016 MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets. Molecular Biology and Evolution, 33, 1870-1874.
Tajima, F., 1989. Statistical-method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics. Vol., 123 pp: 585-595.
Fu, Y.X., 1997. Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics. Vol. 147, pp: 915-925
Avise, J.C.; Nelson, W.S. and Sibley, C.G., 1994. DNA sequence support for a close phylogenetic relationship between some storks and New World vultures. Proceedings of the National Academy of Sciences of the United States of America. Vol. 91, No. 11, pp:5173-5177.
Liu, Y.; Keller, I. and Heckel, G., 2012. Breeding site fidelity and winter admixture in a long-distance migrant, the tufted duck (Aythya fuligula). Heredity. Vol 109, No. 2, pp: 108-116.
Keller, I.; Korner-Nievergelt, F. and Jenni. L., 2009. Within-winter movements: acommon phenomenon in the Common Pochard Aythya ferina. Journal of Ornithology. Vol. 150, No. 2, pp:483-494
He, H.; Yuan, X.; Wei, C. and Yuan, F., 2006. Genetic variation of the Mmitochondrial ND1 region among geographical populations of Sitodiplosis mosellana (Gehin) (Diptera: Cecidomyiidae) in China. Journal of Kansas Entomology Society. Vol. 79, pp: 211-222.
Rogers, A.R., and Harpending, H., 1992. Population growth makes waves in the distribution of pairwise genetic differences. Molecular Biology and Evolution. Vol. 9, No. 3, pp: 552-569.
Ramos-Onsins, S.E. and Rozas, J., 2002. Statistical properties of new neutrality tests against population growth. Molecular biology and evolution. Vol. 19, No. 12, pp: 2092-2100.
Gonzalez, J.; Düttmann, H. and Wink, M., 2009. Phylogenetic relationships based on two mitochondrial genes and hybridization patterns in Anatidae. Journal of Zoology. Vol.279., No. 3, pp: 310-317.
