Genetic Variation among Zandi Sheep Population Using Microsatellite Markers
Subject Areas : Journal of Large Animal Clinical Science Research(JLACSR)
Keywords: Genetic variation, Zandi sheep, Microsatellite markers, polymorphism. HWE,
Abstract :
In this study, the genetic variation in Zandi sheep was investigated using 15 microsatellite markers. Genomic DNA was extracted from 120 Blood samples, using modified salting-out method. All of fifteen loci were amplified successfully and all tested loci were all polymorphic. The Tests of genotype frequencies for deviation from the Hardy-Weinberg equilibrium (HWE) were performed at each locus and revealed significant departure from HWE (P<0.001) due to heterozygote excess. Parameters of variability such as effective number of alleles and gene diversities (Heterozygosity) corroborated the high level of variation frequently displayed by microsatellite markers. Furthermore, other criteria of genetic variation including PIC values and Shanon information index had calculated in this study. The mean of polymorphism information content of the Zandi sheep population was equal to 0.808 and indicate high level of polymorphism. Also the Shannon's information index of the Zandi sheep population was high (1.92 ± 0.09). Based on results of this research, high level of genetic diversity was observed in Zandi breed. This research also was shown that microsatellite markers is a useful tool for evaluation of genetic variation among of domesticated animals.
1- بنابازی، م. (1381): بررسی تنوع ژنتیکی در درون و بین پنج جمعیت گوسفند ایرانی با استفاده از نشانگرهای ریزماهواره. پایان نامه کارشناسی ارشد علوم دامی. دانشکده کشاورزی. دانشگاه تهران. 130ص.
2- توکلیان، ج. (۱۳۷۸) : نگرشی بر ذخائر ژنتیکی دام و طیور ایران. انتشارات موسسه تحقیقات علوم دامی کشور.
3- زاهدی، ز. (1383): بررسی چند شکلی تعدادی از نشانگرهای ریزماهواره در گوسفند بلوچی. پایان نامه کارشناسی ارشد علوم دامی. دانشکده کشاورزی. دانشگاه تربیت مدرس. 89 ص.
4- ننهکرانی، ش. (1389): بررسی تنوع ژنتیکی گوسفندان نژاد پوستی ایران با استفاده از برخی نشانگرهای مولکولی ریزماهواره. رساله دکتری تخصصی علوم دامی، ژنتیک و اصلاح نژاد دام. دانشکده کشاورزی. دانشگاه آزاد اسلامی واحد علوم و تحقیقات تهران. 154 ص.
5- Arora, R., Bhatia, S., Sehrawat, A., Maity, S. B. and Kundu, S. S. (2008): Genetic variability in Jalauni sheep of India inferred from microsatellite data. National Bureau of Animal Genetic Resources, P.O.Box129, Karnal-132001, Haryana, India.
6- Arora, R., Lakhchaura, B. D., Prasad, R. B. and Tantia, M. S. (2004): Genetic diversity analysis of two buffalo populations of northern India using microsatellite markers. Journal of Animal Breeding and Genetics. 121: 111-118.
7- Arranz, J. J., Bayon, Y. and San Primitivo, F. (2001): Differentiation among Spanish sheep breeds using microsatellites. Genetic Selection and Evolution 33, 529-542.
8- Botstein, D., White, R. L., Skolnick, M. and Davis, R. W. (1980): Construction ofa genetic map in man using restriction fragment length polymorphisms. Amer. Journal of Human Genetic. 32: 314–331.
9- Buchanan F.C. and Thue T. D. (1998): Intra breed polymorphic information content of microsatellites in cattle and sheep. Canadian Journal of Animal Science 78, 425-428.
10- Cornuet, J. M., Piry, S., Luikart, G., Estoup, A. and Solignac, M. (1999): New methods employing multi locus genotypes to select or exclude populations as origins of individuals. Genetics 153, 989-2000.
11- Diez-Tascon, C., Littlejohn, R. P., Almeida, P. A. R. and Crawford, A. M. (2000):Genetic variation within the merino sheep breed: analysis of closely related populations using microsatellites. Animal Genetics 31, 243-251.
12- Farid, A., O`Reilly, E., Dollard, C. and Kelsey. Jr. C. R. (2000): Genetic analysis of ten sheep breeds using microsatellite markers. Canadian Journal of Animal Science 80, 9-17.
13- Hedrick, P. W. (1999): Genetic of populations, Second edition. Jones and Bartlett Publishers, Sudbury, MA, USA.
14- Hedrick, P. W. (2000): Genetic of populations. Second edition. Jones and Bartlett Publishers, Sudbury, MA, USA. Pp 553. ISBN 0 7637 10768. DOI:10.1046/j.1365-2540.2000.0819a.x
15- Maddox, J. F., Riffkin, C. D. and Beh, K. J. (2000): Dinucleotide repeat polymorphism at the ovine McMA1, McMA2, McMA5, McMA8, McMA9, McMA11, McMA14, McMA20, McMA24, McMA26 loci. Animal Genetics 31, 148-149.
16- Media Cybernetics Inc. (1998): GEL-Pro Analyzer software. Version 3.1. Silver Spring MD. USA.
17- Miller, S. A., Dykes, D. D. and Polesky, H. F. (1988): A simple salting out procedure for extracting DNA from human nucleated cells. Nucleic Acids Research 16, 1215.
18- Monem, M., Kiyanzad, M. R. and Gharahdagi, A. A. (2006): (Small ruminant breeds of iran) of book Characterization of small ruminant breeds in west asia and north Africa, 3th edition Pp 18-36
19- Ott, J. (1989): Program HET Version 1.10 . Utility programs for analysis of genetic linkage. Rockefeller University. New York, NY, USA. ftp://linkage.rockefeller.edu/software/utilities/.
20- Peakall, R. and Smouse, P. E. (2006): GENALEX 6: genetic analysis in Excel.Population genetic software for teaching and research. Mol Ecol Notes. 6:288-295.
21- Vanhooft, W. F., Hanotte, O., Wenink, P. W., Groen, A. F., Sugimoto, Y. H., Prins, H. T. and Teale, A. (1999): Applicability of Bovine Microsatellite Markers for Population Genetic Studies on African Buffalo (Syncerus caffer). Anim. Genet. 30: 214-220.
22- Yeh, F. C., Yang, R. and Boyle, T. (1999): POPGENE. Version 1.31. Microsoft Window–based Freeware for Population Genetic Analysis, University of Alberta. Edmonton, AB, Canada
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