Probing the Discriminatory role of Non-Equilibrium effects in the Emergence of Biological Homochirality by Considering Quantum Constraints
Subject Areas : Quantum Biology
1 - Bu-Ali Sina University, Faculty of Chemistry and Petroleum, Hamedan, Iran
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References:
M. Flugel, Chirality and Life, Springer-Verlag Berlin Heidelberg, 2011.
Botta, J. L. Bada, J. Gomez-Elvira, E. Javaux, F. Selsis, and R. Summons, Strategies of Life Detection, Springer New York, 2008.
Guijarro and Miguel Yus, The Origin of Chirality in the Molecules of Life, RSC, 2008.
M. Hicks, Chirality: Physical Chemistry, American Chemical Society, 2001.
Sinha and G. A J Amaratunga, Explicit Symmetry Breaking in Electrodynamic Systems and Electromagnetic Radiation, Morgan Claypool, 2016.
Bada J.L, “Origins of homochirality,” Nature, vol. 374, pp. 594–595, 1995.
Bailey, “Astronomical sources of circularly polarized light and the origin of homochirality,” Origin Life, Evol Biosph, vol. 31, pp. 167–183, 2004.
Blackmond, “The origin of biological homochirality,” Cold Spring Harb Perspect Biol, vol.2, pp. a002147-a002156, 2010.
Blackmond and M. Klussmann, “spoilt for choice: assessing phase behavior models for the evolution of homochirality,” Chem Commun, vol. 39, pp.3990–3996, 2007.
I Kwiecińskaand M. Cieplak, “chirality and protein folding,” Journal of Physics: Condensed Matter, vol. 17, pp. 1565-1573, 2005.
Nanda, A. Andrian, and C. Narayanan, “The role of protein homochirality in shaping the energy landscape of folding ,” Protein Sci, vol. 16, pp. 1667-1675, 2007.
Zheng, K. Mao, and H. Zhu, “Chirality effects in Peptide Assembly Structures,” Front. Bioeng. Biotechnol. vol.9, pp. 703-719, 2021.
Wagner, D. Zubarev, A. Guzik, and D. Blackmond, “Chiral sugars derive Enantio enrichment in Prebiotic Amino Acid Synthesis,” ACS Cent. Sci. vol. 3, pp. 322–328, 2017.
Thriumoorthy and N. Nandi, “Chiral discrimination in biomimetic Systems,” J. Phys. Chem. B, vol. 112, pp. 9187-9195, 2008.
Hein and D. Blackmond, “On the Origins of Single Chirality of Amino Acids and Sugars in Biogenesis,” Acc. Chem. Ress, vol. 12, pp. 2045-2054, 2012.
Winogradoff, P.-Y. Li, H. Joshi, L. Quednau, Ch. Maffeo, and A. Aksimentiev, “Chiral Systems made from DNA,” Advanced Sciences, vol. 8, pp. 2003113-2003120, 2021.
Liu, J. Xiao, and B. Yan, “Chirality driven topological electronic structure of DNA like materials,” Nature Materials, vol. 20, pp. 638-644, 2021.
Gawley and J. Aube, Principles of Asymmetric Synthesis, Science Direct, 2nd Ed, 2012.
Marrison, Asymmetric Synthesis, Academic Press, 2nd Ed, 1984.
Salimi, A. Karbakhshzadeh, and N. Salehi, “A Review on Recent approach to the Asymmetric Synthesis of Aziridines Derivatives,” Journal of Chemical Letters, vol. 2, pp. 56-63, 2020.
M P. Silverman, Quantum Superposition Counterintuitive Consequences of Coherence, Entanglement, and Interference, Springer-Verlag Berlin Heidelberg, 2008.
Primas and Chemistry, Quantum Mechanics and Reductionism, Springer-Verlag Berlin Heidelberg New York Tokyo, 1983.
Fang and J. Wang, “Non-equilibrium thermodynamics in cell Biology: Extending equilibrium formalism to cover living systems,” Annual Reviews of Biophysics, vol. 49, pp. 220-247, 2020.
D. Barron, Molecular Light Scattering and Optical Activity, Cambridge University Press, 2nd Ed, 2004.
Berger and J. L. Stuber, “Electroweak interactions in chiral molecules: two component density functional theory study of vibrational frequency shifts in polyhalomethanes,” Molecular Physics, vol. 105, pp. 41-49, 2007.
England, Every Life Is on Fire: How Thermodynamics Explains the Origins of Living Things, Basic Books; Illustrated edition, 2020.
Farshid, B. Tommaso, and G. Nigel, “Noise induced mechanism for Biological Homochirality for early life self replicators,” Physical Review E. vol. 95, pp. 032407, 2017.
K. Kondepudi and G. W. Nelson, “Chiral Symmetry Breaking in non-Equilibrium Systems”, Phys. Rev. Lett. vol. 50, pp.1023-1031, 1983.
Michailian, “Non-Equilibrium Thermodynamic Foundations of the Origin of Life,” Foundations, vol. 2, pp. 308-337, 2022.
Ornes, “How non-equilibrium thermodynamics speaks to the mystery of life,” PNAS, vol. 114, pp. 423-425, 2017.
Herzberg, Molecular Spectra and Molecular Structure, Electronic Spectra and Electronic Structure of Polyatomic Molecules, R.E. Krieger Pub. Co. Malabar, Fla.1991.
P. Bunker and P. Jensen, Molecular Symmetry and Spectroscopy, National Research Council Canada. 2008.
Weiss, Quantum Dissipative Systems, World Scientific Singapore, University of Stuttgart, Germany, 2008.
Chesinscka, F. Pollock, L. Heaney, and A. Nazir, “Dissipative enhanced vibrational sensing in an olfactory molecular switch”, J. Chem. Phys, vol. 142, pp. 025102-025112, 2015.
Schlosshauer, Decoherence and the Quantum to Classical Transition, Sprinegr, Berlin, 2007.
P. Breuer and Francesco Petruccione, Theory of Open Quantum Systems, Oxford University Press, 2008.
C. Cheng and J. Silbey, “Markovian Approximation in the Relaxation of Open Quantum Systems,” J. Phys. Chem. B, vol. 109, pp. 21399-21405, 2005.
R. Kolovsky, “Quantum Entanglement and the Born-Markov Approximation for an Open Quantum System,” Phys. Rev. E, vol. 101, pp. 062116-062123, 2020.
T. M. Kennis, D. S. Larsen, K. Ohta, M. T. Facciotti, and G. R. Fleming, “Ultrafast Protein Dynamics of bacteriorhodopsin probed by photon echo and transient absorption spectroscopy,” J. Phys. Chem. B, vol.106, pp. 6067-6073, 2002.
Abbott, P. Davies, and A. Pati, Qauntum Aspects of Life, Imperial College Press, ch.5, 2008.
Laurent, D. Lacoste, and P. Gaspard, “Emergence of Homochirality in Large Molecular Systems,” PNAS, vol.118, pp: 41118-41122, 2021.
Plasson, D. Kundepudi, and K. Asakura, “Emergence of homochirality in far-from-equilibrium systems: Mechanisms and role in prebiotic chemistry," Chirality, vol. 19, pp: 589-600, 2007.
Naskar, V. Mujika, and C. Herrmann, “Chiral induced Spin Selectivity and spin Accumulation in Molecules and Interfaces: A First Principle Study,” J. Chem. Phys. Lett, vol. 14, pp: 694-701, 2023.
Xie et. al, “Programmable Transient Super molecular Chiral Hydrogels by a Chemically Fueled Non-Equilibrium self-assembly Strategy,” Angew Chem Int Ed Engl. Vol. 134, pp: 4471-4486, 2022.
Sella, S. Vivek, and A. Arto, “Cause of Chirality Consensus,” Current Chemical Biology, vol. 2, pp: 153-158, 2008.
Racah, "Theory of Complex Spectra II.,” Phys. Rev. A,vol. 62, pp: 438–462, 1942.
B. Wilson and P. C. Cross, Molecular Vibration: Theory of Infrared and Raman Vibrational Spectra, Dover, 1980.
