Enhancing Germination of Habenaria janellehayneana (Orchidaceae): Insight from Asymbiotic and Symbiotic Methods
Subject Areas : Journal of Ornamental PlantsTheera Thummavongsa 1 , Chuthapond Musimun 2 , Santi Watthana 3 , Stephan Gale 4 , Rattaket Choeyklin 5 , Natthawut Wiriyathanawudhiwong 6 , Nooduan Muangsan 7
1 - Department of Biology, Faculty of Science and Technology, Nakhon Ratchasima Rajabhat University, Nakhon Ratchasima, Thailand
2 - School of Biology, Institute of Science, Suranaree University of Technology, Nakhon Ratchasima, Thailand
3 - School of Biology, Institute of Science, Suranaree University of Technology, Nakhon Ratchasima, Thailand
4 - Kadoorie Farm and Botanic Garden, Lam Kam Road, Tai Po, Hong Kong S.A.R., China
5 - National Biobank of Thailand (NBT), National Science and Technology Development Agency (NSTDA), Thailand Science Park, Phaholyothin Road, Klong Luang, Pathumthani, Thailand
6 - National Biobank of Thailand (NBT), National Science and Technology Development Agency (NSTDA), Thailand Science Park, Phaholyothin Road, Klong Luang, Pathumthani, Thailand
7 - School of Biology, Institute of Science, Suranaree University of Technology, Nakhon Ratchasima, Thailand
Keywords: Micropropagation, Mycorrhiza, Ornamental plant, Terrestrial orchids.,
Abstract :
Habenaria janellehayneana Choltco, Moloney, & Yong Gee (Orchidaceae) is a lithophytic orchid with striking pink flowers that is endemic to Phitsanulok Province, northern Thailand. Only a few populations of this species are found in Phu Hin Rong Kla National Park. To maintain rare plant species in ex situ collections thereby preventing extinctions, along with the aim of mass propagation for ornamental reasons, it is crucial that suitable propagation methods are developed. In this paper, we describe protocols for the asymbiotic and symbiotic germination of H. janellehayneiana. Of the four growing media tested, germination percentages were greatest on ½ VW (18.97%), followed by ½ MS (14.20%), MS (12.46%), and VW (11.93%) at 16 weeks, and protocorm development was most advanced (stage 4) within 10 weeks. Of the three plant growth regulators tested, including 6-benzylaminopurine (BAP), gibberellic acid (GA), and thidiazuron (TDZ), at 0, 1, 3, and 5 mg/L concentrations, 1 mg/L BAP significantly enhanced seed germination (P <0.05) when compared to the control (8.47%). For symbiotic seed germination, two non-mycorrhizal endophytic fungi isolates of the genera Aspergillus and Colletotrichum increased seed germination by 14.03% and 11.00% respectively, when compared to the control (6.15%). These findings demonstrate that it is possible to germinate the seeds of H. janellehayneana via both asymbiotic and symbiotic method, with a symbiotic approach providing the best outcomes, and this could assist in the conservation of this and other rare terrestrial orchids, as well as increase their value in the ornamental market.
Abebe, Z., Mengesha, A., Teressa, A. and Tefera, W. 2009. Efficient in vitro multiplication protocol for Vanilla planifolia using nodal explants in Ethiopia. African Journal of Biotechnology, 8 (24): 6817-6821.
Ackerman, J.D., Phillips, R.D., Tremblay, R.L., Karremans, A., Reiter, N., Peter, C.I., Bogarín, D., Pérez-Escobar, O.A. and Liu, H. 2023. Beyond the various contrivances by which orchids are pollinated: Global patterns in orchid pollination biology. Botanical Journal of the Linnean Society, boac082. https://doi.org/10.1093/botlinnean/boac082
Almanza-Álvarez, J., Garibay-Orijel, R., Salgado-Garciglia, R., Fernández-Pavía, S.P., Lappe-Olivera, P., Arellano-Torres, E. and Ávila-Díaz, I. 2017. Identification and control of pathogenic fungi in neotropical valued orchids (Laelia spp.). Tropical Plant Pathology, 42: 339–351.
Alomía,Y.A., Mosquera-E, A.T., Flanagan, N.S. and Otero, J. 2017. Seed viability and symbiotic seed germination in Vanilla spp. (Orchidaceae). Research Journal of Seed Science, 10: 43–52.
Alomía, Y.A., Otero, J., Jersáková, J. and Stevenson, P.R. 2022. Cultivable fungal community associated with the tropical orchid Dichaea andina. Fungal Ecology, 57–58: https://doi.org/10.1016/j.funeco.2022.101158
Altschul, S.F., Madden, T.L., Shaffer, A.A., Zhang, J., Zhang, Z., Miller, M. and Lipman, D.J. 1997. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Research, 25: 3389-3402.
Arditti, J. and Ghani, A.K.A. 2000. Erratum: Numerical and physical properties of orchid seeds and their biological implications. New Phytologist, 145: 367-421. https://doi.org/10.1046/j.1469-8137.2000.00675.x
Batista, J.A., Borges, K.S., de Faria, M.W., Proite, K., Ramalho, A.J., Salazar, G.A. and van den Berg, C. 2013. Molecular phylogenetics of the species rich genus Habenaria (Orchidaceae) in the new world based on nuclear and plastid DNA sequences. Molecular Phylogenetics and Evolution, 67(1): 95-109. https://doi.org/10.1016/j.ympev.2013.01.008
Carbone, I. and Kohn, L.M. 1999. A method for designing primer sets for speciation studies in filamentous ascomycetes. Mycologia, 91: 553–556.
Chen, X.M., Dong, H.L., Hu, K.X., Sun, Z.R., Chen, J. and Guo, S.X. 2010. Diversity and antimicrobial and plant-growth-promoting activities of endophytic fungi in Dendrobium loddigesii Rolfe. Journal of Plant Growth Regulation, 29: 328-337.
Choltco, T.C., Moloney, B. and Yong Gee, G. 2017. A new Habenaria from northern Thailand (Subfamily: Orchidoideae Tribe: Orchideae Subtribe: Orchidinae). Orchideen Journal, 4-5: 1-4.
Christenhusz, M.J.M. and Byng, J.W. 2016. The number of known plants species in the world and its annual increase. Phytotaxa, 261 (3): 201-217. Doi:10.11646/phytotaxa.261.3.1
Chutima, R., Dell, B., Vessabutr, S., Bussaban, B. and Lumyong, S. 2011. Endophytic fungi from Pecteilis susannae (L.) Rafin (Orchidaceae), a threatened terrestrial orchid in Thailand. Mycorrhiza, 21: 221–229.
Cig, A., Demiler Durak, E. and Işler, S. 2018. In vitro symbiotic germination potentials of some Anacamptis, Dactylorhiza, Orchis and Ophrys terrestrial orchid species. Applied Ecology and Environmental Research, 16: 5141-5155. DOI:10.15666/aeer/1604_51415155
Fay, M.F. 1992. Conservation of rare and endangered plants using in vitro methods. In Vitro Cellular & Developmental Biology. Plant, 28P(1): 1–4. http://www.jstor.org/stable/20064802
Fay, M.F. 2018. Orchid conservation: How can we meet the challenges in the twenty-first century?. Botanical Studies, 59: 16. https://doi.org/10.1186/s40529-018-0232-z
Gale, S.W., Fischer, G.A., Cribb, P.J. and Fay, M.F. 2018. Orchid conservation: Bridging the gap between science and practice. Botanical Journal of the Linnean Society, 186: 425–434.
Gardes, M. and Bruns, T.D. 2013. ITS primers with enhanced specificity for basidiomycetes-application to the identification of mycorrhizae and rusts. Molecular Ecology, 2: 113–118.
Glass, L.N. and Donaldson, G.C. 1995. Development of primer sets designed for use with the PCR to amplify conserved genes from Filamentous ascomycetes. American Society of Microbiology, 61: 1320–1330.
Govaerts, R., Dransfield, J., Zona, S., Hodel, D.R. and Henderson, A. 2019. World checklist of Orchidaceae. Facilitated by the Royal Botanic Gardens, Kew. Published on the Internet; Retrieved from http://wcsp.science.kew.org/ Accessed on 05-06-2022.
Guerber, J.C.; Liu, B.; Correll, J.C. and Johnston, P.R. 2003. Characterization of diversity in Colletotrichum acutatum sensu lato by sequence analysis of two gene introns, mtDNA and intron RFLPs, and mating compatibility. Mycologia, 95: 872–895.
Hall, T.A. 1999. BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series, 41: 95–98.
International Cooperation and Cooperation Group Wildlife and Wild Flora Protection Division. 2013. CITES Conserved Plants (CITES): Wild Orchids in the Eastern Forest Part 1 under the Convention Department of National Parks, Wildlife and Plant Conservation; Edited [by] Arporn Udomsilp, Bangkok.
Keel, B.G., Zettler, L.W. and Kaplin, B.A. 2011. Seed germination of Habenaria repens (Orchidaceae) in situ beyond its range, and its potential for assisted migration imposed by climate change. Castanea, 76 (1): 43–54.
Khamchatra, N., Dixon, K.W., Tantiwiwat, S. and Piapukiew, J. 2016. Symbiotic seed germination of an endangered epiphytic slipper orchid, Paphiopedium villosum (Lindl.) Stein. from Thailand. South African Journal of Botany, 104: 76-81.
Lauzer, D., St-Arnaud, M. and Barabe, D. 1994. Tetrazolium staining and in vitro germination of mature seeds of Cypripedium acaule (Orchidaceae). Lindleyana, 9: 197-204.
Li, T., Yang, W., Wu, S., Selosse, M.A. and Gao, J. 2021. Progress and prospects of mycorrhizal fungal diversity in orchids. Frontiers in Plant Sciences, 12: 646325. https://doi.org/10.3389/fpls.2021.646325
Ma, X., Nontachaiyapoom, S., Jayawardena, R.S., Hyde, K.D., Gentekaki, E., Zhou, S., Qian, Y., Wen, T. and Kang, J. 2018. Endophytic Colletotrichum species from Dendrobium spp. in China and northern Thailand. MycoKeys, 43: 23-57. https://doi.org/10.3897/mycokeys.43.25081
Meng, Y.Y., Shao, S.C., Liu, S.J. and Gao, J.Y. 2019. Do the fungi associated with roots of adult plants support seed germination? A case study on Dendrobium exile (Orchidaceae). Global Ecology and Conservation, 17: e00584.
Mohanty, P., Paul, S., Das, M.C., Kumaria, S. and Tandon, P. 2012. A simple and efficient protocol for the mass propagation of Cymbidium mastersii: An ornamental orchid of Northeast India. AoB Plants, pls023. doi: 10.1093/aobpla/pls023
Murashige, T. and Skoog, F.A. 1962. Revised medium for rapid growth and bioassays with tobacco tissue 354 cultures. Physiologia Plantarum, 15: 473-497.
Neiland, M.R.M. and Wilcock, C.C. 1998. Fruit set, nectar reward, and rarity in the Orchidaceae. American Journal of Botany, 85(12): 1657–1671. https://doi.org/10.2307/2446499
Nongdam, P., Beleski, D.G., Tikendra, L., Dey, A., Varte, V., EL Merzougui, S., Pereira, V.M., Barros, P.R. and Vendrame, W.A. 2023. Orchid micropropagation using conventional semi-solid and temporary immersion systems: A review. Plants, 12(5): 1136. https://doi.org/10.3390/plants12051136
Paek, K.Y., Hahn, E.J. and Park, S.Y. 2011. Micropropagation of Phalaenopsis orchids via protocorms and protocorm-like bodies. In: Thorpe, T., Yeung, E. (eds) Plant Embryo Culture. Methods in Molecular Biology, 710. Humana Press. https://doi.org/10.1007/978-1-61737-988-8_20
Piyatrakul, P. 2014. Factors influencing germination and seedling development of Habenaria rhodocheila Hance. Thesis master’s degree. Chiang Mai University, Chiang Mai 171 p. (in Thai)
POWO. 2023. Plants of the world online. Facilitated by the Royal Botanic Gardens, Kew. Published on the Internet; http://www.plantsoftheworldonline.org/ Retrieved 01 June 2023.
Pridgeon, A. 2001. Genera Orchidacearum: Orchidoideae (part 1). Oxford University Press. 411 page.
Rasmussen, H.N., Dixon, K.W., Jersáková, J. and Těšitelová, T. 2015. Germination and seedling establishment in orchids: A complex of requirements. Annals of Botany, 116: 391–402. https://doi.org/10.1093/aob/mcv087
Sangmanee, P., Shutsrirung, A. and Potepohn, N. 2012. Effects of mycorrhizas on growth of terrestrial orchid Habenaria erichmichelii Christenson. Journal of Agriculture, 28(3): 237-244. (In Thai) http://cmuir.cmu.ac.th/jspui/handle/6653943832/64334
Sarsaiya, S., Jain, A., Jia, Q., Fan, X., Shu, F., Chen, Z., Zhou, Q., Shi, J. and Chen, J. 2020. Molecular identification of endophytic fungi and their pathogenicity evaluation against Dendrobium nobile and Dendrobium officinale. International Journal of Molecular Sciences, 21(1):316. https://doi.org/10.3390/ijms21010316
Setiaji, A., Annisa, R., Santoso, A.D., Kinasih, A. and Riyadi, A. 2021. Review: Factors affecting mass propagation of Vanda orchid in vitro. Cell biology and Development, 5 (2): 51-62. https://doi.org/10.13057/cellbioldev/v050201
Shah, S., Shrestha, R., Maharjan, S., Selosse, M.A. and Pant, B. 2018. Isolation and characterization of plant growth-promoting endophytic fungi from the roots of Dendrobium moniliforme. Plants (Basel), 8(1): 5. doi: 10.3390/plants8010005
Sisti, L.S., Flores-Borges, D.N.A., de Andrade, S.A.L., Koehler, S., Bonatelli, M.L. and Mayer, J.L.S. 2019. The role of non-mycorrhizal fungi in germination of the mycoheterotrophic orchid Pogoniopsis schenckii Cogn. Frontiers in Plant Science, 10: 1589. doi: 10.3389/fpls.2019.01589
Sneh, B., Burpee, L. and Ogoshi, A. 1991. Identification of Rhizoctonia species. St. Paul, Minnesota: APS Press, pp. 2.
Stamatakis, A. 2014. RAxML version 8: A tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics, 30: 1312–1313. https://doi.org/10.1093/ bioinformatics/btu033
Stewart, S. and Kane, M. 2006a. Symbiotic seed germination of Habenaria macroceratitis (Orchidaceae), a rare Florida terrestrial orchid. Plant Cell, Tissue and Organ Culture, 86: 159-167.
Stewart, S. and Kane, M. 2006b. Asymbiotic seed germination and in vitro seedling development of Habenaria macroceratitis (Orchidaceae), a rare Florida terrestrial orchid. Plant Cell, Tissue and Organ Culture, 86: 147-158.
Stewart, S. and Kane, M. 2007. Symbiotic seed germination and evidence for in vitro mycobiont specificity in Spiranthes brevilabris (Orchidaceae) and its implication for species-level conservation. In Vitro Cellular and Developmental Biology, 43: 178-186.
Stewart, S.L. and Zettler, L.W. 2002. Symbiotic germination of three semi-aquatic rein orchids (Habenaria repens, H. quinqueseta, H. macroceratitis) from Florida. Aquatic Botany, 72(1): 25-35.
Swarts, N.D. and Dixon, K.W. 2009. Terrestrial orchid conservation in the age of extinction. Annals of Botany, 104 (3): 543-556. https://doi.org/10.1093/aob/mcp025
Tao, G., Liu, Z.Y., Liu, F., Gao, Y.H. and Cai, L. 2013. Endophytic Colletotrichum species from Bletilla ochracea (Orchidaceae), with descriptions of seven new species. Fungal Diversity, 61: 139–164. http://doi.org/10.1007/s13225-013-0254-5
Thompson, J.D., Higgins, D.G. and Gibson, T.J. 1994. CLUSTAL W: İmproving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research, 22 (22): 4673-80. doi: 10.1093/nar/22.22.4673. PMID: 7984417; PMCID: PMC308517.
Thummavongsa, T., Watthana, S., Musimun, C. and Muangsan, N. 2022. Asymbiotic germination of Habenaria rhodocheila Hance on different culture media and impact of plant growth regulators. Asia-Pacific Journal of Science and Technology, 27(05): APST–27. https://doi.org/10.14456/apst.2022.82
Umata, H., Ota, Y., Gale, S. W., Chuman, S., Nishi, M., Ashihara, S. and Yagi, F. 2022. Spatial separation of mycobionts in the giant, differentiated root system of Cyrtosia septentrionalis, a fully myco-heterotrophic orchid. Botany, 100: 813–825.
Vacin, E.F. and Went, F.W. 1949. Some pH changes in nutrient solutions. Botanical Gazette, 110: 605- 356.
White, T., Bruns, T., Lee, S., Taylor, J., Innis, M., Gelfand, D. and Sninsky, J. 1990 Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In PCR Protocols; Academic Press: San Diego, CA, USA, 31: 315–322.
Yam, T. and Arditti, J. 2009. History of orchid propagation: A mirror of the history of biotechnology. Plant Biotechnology Reports, 3: 1-56. https://doi.org/10.1007/s11816-008-0066-3
Yeh, C.M., Chung, K., Liang, C.K. and Tsai, W.C. 2019. New insights into the symbiotic relationship between orchids and fungi. Applied Sciences, 9 (3): 585. https://doi.org/10.3390/app9030585
Zanello, C.A., Duarte, W.N., Gomes, D.M. and Cardoso, J.C. 2022. Micropropagation from inflorescence nodal segments of Phalaenopsis and acclimatization of plantlets using different substrates. Horticulturae, 8: 340. https://doi.org/10.3390/horticulturae8040340
Zeng, S., Huang, W., Wu, K., Zhang, J., da Silva, J.A. and Duan, J. 2016. In vitro propagation of Paphiopedilum orchids. Critical Reviews in Biotechnology, 36(3): 521-34. doi: 10.3109/07388551.2014.993585
Zhang, W. and Gao, J. 2021. A comparative study on the reproductive success of two rewarding Habenaria species (Orchidaceae) occurring in roadside verge habitats. BMC Plant Biology, 21(1): 187. https://doi.org/10.1186/s12870-021-02968-w
Zhu, G.S., Yu, Z.N., Gui, Y. and Liu, Z.Y. 2008. A novel technique for isolating orchid mycorrhizal fungi. Fungal Diversity, 33: 123-137.
Enhancing germination of Habenaria janellehayneana (Orchidaceae): Insight from asymbiotic and symbiotic methods
Hightlights
· Habenaria janellehayneana is valuable for ornamental purpose in floriculture
· Four different medium (VW, 1/2VW, MS and 1/2MS) and three plant growth regulators were tested for asymbiotic seed germination, whereas thirty-five fungal isolates were tested for symbiotic seed gemination.
· The best asymbiotic seed germination enhancement occurred with 12VW medium or the addition of 1 mg/L BAP, with seeds on this medium developing to stage 4 protocorms. SUT-HJ-I35 isolate was effective in promoting symbiotic seed germination, resulting in seed development to stage 3.
Graphical abstract
Abstract
Habenaria janellehayneana Choltco, Moloney, & Yong Gee (Orchidaceae) is a lithophytic orchid with striking pink flowers that is endemic to Phitsanulok Province, northern Thailand. Only a few populations of this species are found in Phu Hin Rong Kla National Park. To maintain rare plant species in ex situ collections thereby preventing extinctions, along with the aim of mass propagation for ornamental reasons, it is crucial that suitable propagation methods are developed. In this paper, we describe protocols for the asymbiotic and symbiotic germination of H. janellehayneiana. Of the four growing media tested, germination percentages were greatest on ½ VW (18.97%), followed by ½ MS (14.20%), MS (12.46%), and VW (11.93%) at 16 weeks, and protocorm development was most advanced (stage 4) within 10 weeks. Of the three plant growth regulators tested, including 6-benzylaminopurine (BAP), gibberellic acid (GA), and thidiazuron (TDZ), at 0, 1, 3, and 5 mg/L concentrations, 1 mg/L BAP significantly enhanced seed germination (p <0.05) when compared to the control (8.47%). For symbiotic seed germination, two non-mycorrhizal endophytic fungi isolates of the genera Aspergillus and Colletotrichum increased seed germination by 14.03% and 11.00% respectively, when compared to the control (6.15%). These findings demonstrate that it is possible to germinate the seeds of H. janellehayneana via both asymbiotic and symbiotic method, with a symbiotic approach providing the best outcomes, and this could assist in the conservation of this and other rare terrestrial orchids, as well as increase their value in the ornamental market.
Keywords: micropropagation, mycorrhiza, ornamental plant, terrestrial orchids
INTRODUCTION
Although orchids often constitute a significant proportion of regional floras in terms of species numbers (Christenhusz and Byng, 2016; Fay, 2018), they are characterized by low reproductive success (Neiland and Wilcock, 1998; Zhang and Gao, 2021) and are thus typically present at low abundance (Zhang and Gao, 2021). The reasons for this appear to be associated with ecological specialization at key life cycle stages, notably their requirement for myco-heterotrophic germination (Rasmussen et al., 2015; Yeh et al., 2019), as well as their subsequent transition to autotrophism for seedling establishment (Rasmussen et al., 2015) and dependence on specific vectors (mostly insects) for pollination (Swarts and Dixon 2009; Ackerman et al., 2023). Not only does this restrict the geographic range and ecological amplitude of many species, but it also renders them highly sensitive to extraneous threats. As a result, orchids are regarded as facing a disproportionately high degree of extinction risk as compared with other taxa (Fay 2018), with declining numbers and population fragmentation causing genetic erosion and a breakdown in key ecological processes (Gale et al., 2018).
In vitro propagation is frequently highlighted as a useful means of propagating rare and threatened orchids for ex-situ conservation (Stewart and Kane 2007; Swarts and Dixon 2009; Fay 1992; Fay 2018), and tissue culture technology has been widely applied to the mass propagation of various orchids of significant commercial value (Abebe et al., 2007; Mohanty et al., 2012; Paek et al., 2012; Zeng et al., 2016; Zanello et al., 2022). However, established in vitro protocols are limited to just a few high-profile genera or species and are not always transferable to less well studied taxa, particularly those, often rarer species with specific requirements for germination. Several approaches have been tested to overcome the difficulties of orchid seed germination, including both asymbiotic and symbiotic techniques, the use of mature/immature seeds, light/dark treatments, sterilization, scarification treatments, and modified culture systems (Arditti and Ghani 2000; Rasmussen et al., 2015; Setiaji et al., 2021; Nongdam et al., 2023).
This genus Habenaria Willd. (Orchidaceae) contains about 928 terrestrial and lithophytic species and is characterized by the presence of a combination of derived floral traits with showy petals (Pridgeon et al., 2001; Batista et al., 2013; Govaerts et al., 2019). Habenaria janellehayneana Choltco. B. Moloney & Yong, a rare terrestrial species with pink flowers, was newly named in 2017 by Choltco et al. (2017) after concluding that it ought to be segregated from the widespread H. rhodocheila complex. Unlike H. rhodocheila Hance and H. erichmichelii Christenson, the stigmas of this species are basally parallel but convergent and touching (or nearly so) towards the apex. The species is native to Phitsanulok in northern Thailand and is regarded as a priority for conservation in the country (International Cooperation and Cooperation Group Wildlife and Wild Flora Protection Division, 2013; PoWO, 2023). Because it has comparatively large, showy pink flowers, its population has declined due to poaching and the impacts of disturbance.
Habenaria species are notoriously difficult to propagate in vitro due to inherent barriers to seed germination and seedling establishment, with capsule maturity, medium nutrient content, culture method, growth factors and mycorrhizal fungi all being important factors (Stewart and Zettler, 2002; Keel et al., 2011). Several researchers have attempted symbiotic culture of Habenaria seeds, which has been shown to promote seed germination (Stewart and Kane, 2006a; Sangmanee et al., 2012). Further, Stewart and Kane (2006b) reported the method of asymbiotic seed germination of H. macroceratitis, but no leaf formation was observed. Sangmanee et al. (2012) examined the growth of H. erichmichelii in the presence of mycorrhizae and found that average plant height was increased when the culture medium was inoculated with fungal strains of Humicola sp. and Oidiodendron sp., but not with Fusarium sp., Nodulisporium sp. and Trichoderma sp. Symbiotic seed germination of H. janellehayneiana, on the other hand, has never been reported. The aim of the present study was therefore to find the best conditions for both symbiotic and asymbiotic germination of this important species. Various media, plant growth regulators, and different fungal isolates, were examined.
MATERIALS AND METHODS
Plant material and seed storage
Habenaria janellehayneana is a terrestrial orchid that mostly grows on moist rocks besides streams and waterfalls in Phitsanulok Province, Thailand (Fig. 1). Mature undehisced plant capsules (7–8 weeks old) of H. janellehayneana (n=3) were collected with a permit from Phu Hin Rong Kla National Park in 2018. We used paper bags with silica gel for capsule storage until dehiscence, then stored the resulting brown seeds at 4°C in a sterile Eppendorf tube. Seed vigor was tested within 7 days after staining in a 1% triphenyl tetrazolium chloride (TTC) test at 30 ±2 °C for seven days (Lauzer et al., 1994), with embryos becoming orange or reddish in color considered viable.
Fungal isolation and identification
Roots and rhizomes of plant specimens at vegetative and reproductive stages were collected in a sterile plastic bag, transported to the laboratory within 24–48 h, and refrigerated at 4°C before use. In the laboratory, the roots and rhizomes were then cleaned with tap water, trimmed into 1 cm sections and sterilized in a five min immersion in 0.5% NaOCl. Under a stereomicroscope, the segments were dissected transversely, and pelotons were taken from the cortical cells with a dissecting needle. The pelotons were washed with sterile distilled water five times, placed on a potato dextrose agar (PDA) plate adding both streptomycin and tetracycline at 100 mg/mL concentration, and incubated for 48–72 h at 30 ± 2°C in the dark. Each fungal mycelia colony was sub-cultured on a fresh PDA media for purification.
The characterization and identification of fungi followed the methods by Zhu et al., (2008) for Rhizoctonia species. Genomic DNA of 14-day-old fresh fungal cultures was extracted using a universal and automated nucleic acid extraction system including MagLEAD 12gC machine (Hitachi Co., Ltd.) and a prefilled reagent cartridge for nucleic acid extraction MagDEA® Dx SV kit (Precision System Science Co., Ltd.). Five loci were amplified and sequenced, including beta-tubulin (tub), chitin synthase 1 (chs-1), actin (act), glyceraldehyde-3-phosphate dehydrogenase (gadph), and the internal transcribed spacer regions (ITS).Genes were amplified and sequenced using the primer pairs ITS-1F + ITS4 (Gardes and Bruns, 1993; White et al., 1990), GDF1 + GDR1 (Guerber et al., 2003), CHS-354R + CHS-79F (Carbone et al., 1999), ACT-512 F + ACT-783R (Carbone et al., 1999), and Bt2a + Bt2b (Glass, 1995) respectively. The PCR mixture with a total volume of 25 µL contained 5 ng of genomic DNA, 1.25 unit of Taq DNA polymerase (GeneDireX, Inc.), and 0.2 µM of each primer. PCR amplifications were performed in T100 thermal cycler (Bio-Rad Laboratories Ltd., Thailand). The following thermocycling conditions were used: initial denaturation at 95°C for 3 min, followed by 35 cycles of 40 s at 94°C, 45 s at 54°C (for ITS and tub2 gene) or 52°C (for gadph, chs-1, and act genes), and 1 min at 72°C, followed by a final step of extension at 72°C for 7 min. Purified PCR amplicons were used to perform direct PCR sequencing of both DNA strands with Applied Biosystems™ 3500 Genetic Analyzer (Thermo Fisher Scientific (Thailand) Co. Ltd.). Using BioEdit (v.7.2.5; Hall, 1999), Forward and reverse primers were assembled to obtain consensus sequences that were subsequent deposited in GenBank (Table 5). The resulting sequence data were edited and subsequently evaluated using BLAST-n (Altschul et al., 1997) to determine affiliation to other sequenced relatives.
For phylogenetic analysis, multiple DNA sequences of act, chs-1, chs-1, gadph, ITS, and tub2 were concatenated for isolate SUT-HJ-I04, and ITS and tub2 were concatenated for isolate SUT-HJ-I35. The DNA sequences were aligned using ClustalW multiple alignment (Thompson et al., 1994) and manually adjusted where necessary using BioEdit (v.7.2.5). For phylogenetic analysis, DNA sequences from the Colletotrichum boninense species complex and C. gloeosporioides were used as outgroups for isolate SUT-HJ-I04, while sequences from the Aspergillus species complex section Terrei and A. neoflavipes in section Flavipedes were used as an outgroup for isolate SUT-HJ-I35. Maximum Likelihood (ML) phylogenetic tree with bootstrap (1000 replicates) were constructed with RaxML v.8 (Stamatakis, 2014) and plotted with FigTree (v.1.4.4; http://tree.bio.ed.ac.uk/software/figtree/).
The following four different basal media modified with 2% sucrose, 15% coconut water and 0.8% agar were used to test their influence on seed germination and protocorm formation: (1) Vacin and Went (VW; Vacin and Went 1949), (2) ½ VW, (3) Murashige and Skoog (MS; Murashige and Skoog 1962), and (4) ½ MS. Separately, we also enriched the ½ VW medium with the following three plant growth regulators at 0, 1, 3, and 5 mg/L concentrations to assess their impact on germination and early growth: 6-benzylaminopurine (BAP), gibberellic acid (GA), and thidiazuron (TDZ).
2.3 Symbiotic seed germination
We evaluated the efficacy of 35 fungal isolates (8 Rhizoctonia-like and 27 endophyte isolates) in facilitating H. janellehayneana symbiotic seed germination using the modified method of Stewart and Kane (2006a). The seed surface disinfection was the same as described above. About 100 viable seeds were sown on a nylon mesh and placed onto 1/10 oatmeal agar (OMA) which had has its pH adjusted to 5.5. A 5 mm-diameter plug was then excised from the edge of 7-day old, actively growing mycelium of each fungal inoculum (Yam and Arditti, 2009), and this was inoculated onto the oatmeal agar medium with uninoculated plates serving as a control. Four replicates of each treatment were wrapped in parafilm and kept at 25 ± 2°C in darkness for four weeks, followed by 12 weeks at 16 h light/8 h dark. The germination and developmental stages were graded in the same manner as described above.
Statistical analysis
A completely randomized design (CRD) was used to set up all of the studies. To normalize variability, the data were transformed to the square root of the arcsine before analysis. The statistical software package SPSS V16.0 (SPSS Inc., Chicago, USA) was used for ANOVA, and the means were compared using Duncan's multiple range test (P=0.05).
RESULTS AND DISCUSSION
Asymbiotic seed germination
The TTC test of H. janellehayneana seeds revealed a mean stainability of 14.89 ± 1.77%, which was very low and could be caused by low pollination rates in nature. Within four weeks after sowing, seeds were swollen and were scored as stage 1 (embryo swollen; Fig. 2) in all tested media. At 16 weeks, the ½ VW media showed the highest germination (18.97%), followed by ½MS (14.20%), MS (12.46%), and VW (11.93%). All media supported advanced protocorm development up to stage 4 (leaf emergence) within 10 weeks, with no significant difference among them for stages 1–4; however, ½ VW had the highest frequencies for all stages (Table 1). These results are similar to those previously reported by Thummavongsa et al. (2022), in which both half- and full-strength MS and VW media supported germination of H. rhodocheila, but ½ VW gave better performance overall. This might, perhaps, be due to its phosphate-rich regime, although different species in the same genus might be expected to have different media preferences. Stewarts and Kane (2006) showed that, among six tested media, percent seed germination of H. macroceratitis was greatest on both KC and LM (about 89%). On the other hand, H. edgeworthii Hook.f. ex. Collett exhibited the highest seed germination rates on a MS with 1.0 μM α-naphthalene acetic acid (NAA) (Giri et al., 2012).
Fig. 1. Habenaria janellehayneana at Phu Hin Rong Kla National Park, Thailand. A: flower morphology; B: habitat.
Fig. 2. Protocorm developmental stages of H. janellehayneana on ½ VW agar. A: Stage 0 (no germination); B: Stage 1 (embryo swollen with rhizoids present); C: Stage 2 (embryo enlargement with ruptured testa); D: Stage 3 (protomeristem appearance); E: Stage 4 (first leaf emergence); FL: first emerged leaf; P: protomeristem; R: rhizoids. bar = 500 µm.
Table 1. Effect of basal media on seed germination and development of H. janellehayneana for 16 weeks
Media | Stage 1 (%) | Stage 2 (%) | Stage 3 (%) | Stage 4 (%) | Stage 5 (%) | Total (%) |
VW | 6.70 ± 1.75 | 2.66 ± 1.50 | 1.64 ± 1.05 | 0.91 ± 1.06 | 0 | 11.93 ± 2.66b |
½VW | 12.00 ± 3.00 | 2.75 ± 2.62 | 1.92 ± 1.41 | 2.28 ± 1.12 | 0 | 18.97 ± 2.47a |
MS | 9.40 ± 4.32 | 1.39 ± 1.87 | 0.69 ± 0.46 | 0.97 ± 1.37 | 0 | 12.46 ± 2.49b |
½MS | 9.01 ± 3.19 | 2.67 ± 2.48 | 1.33 ± 0.94 | 1.18 ± 0.49 | 0 | 14.20 ± 4.66ab |
Different letters in each column show significant differences at P < 0.05 (DMRT). Each mean value is determined by stereomicroscopic examination.
Different types and concentrations of plant growth regulators had different effects on seed germination and growth of H. janellehayneana (Table 2). The addition of BAP, GA, and TDZ resulted in enhanced seed germination percentages, ranging from 8.33% to 13.16%, as compared with the control (8.47%). Media with 1 mg/L BA added gave the highest germination percentage (13.16%), which significantly differed from the control and 1 mg/L TDZ treatments. Seeds grown on media with 1, 3, 5 mg/L BAP and 3 mg/L GA proceeded to stage 4 (protocorm), as did those on the control, whereas seeds on media with 1, 3 mg/L GA and 3 mg/L TDZ stopped at stage 3. On the other hand, seeds on media with 5 mg/L TDZ added stopped at stage 1, indicating that a high TDZ concentration has an inhibitory effect on protocorm development (Table 2).
Table 2. Effect of plant growth regulators on seed germination and development of H. janellehayneana cultured on modified ½VW media for 16 weeks.
Treatment | Stage 1 (%) | Stage 2 (%) | Stage 3 (%) | Stage 4 (%) | Stage 5(%) | Total (%) |
control | 6.98 ± 1.95 | 0.55 ± 1.11ab | 0.75 ± 0.58abc | 0.18 ± 0.37ab | 0 | 8.47 ± 1.87b |
1 mg/L BAP | 10.01 ± 2.78 | 0.98 ± 0.89ab | 1.79 ± 0.98a | 0.37 ± 0.43ab | 0 | 13.16 ± 3.51a |
3 mg/L BAP | 7.69 ± 3.15 | 0.76 ± 0.66ab | 0.89 ± 1.04abc | 0.71 ± 0.82ab | 0 | 10.06 ± 3.59ab |
5 mg/L BAP | 9.64 ± 3.12 | 0.61 ± 0.42ab | 0.49 ± 0.62bc | 0.24 ± 0.49ab | 0 | 10.99 ± 3.39ab |
1 mg/L GA | 7.80 ± 1.52 | 0.71 ± 0.12ab | 0.56 ± 0.38bc | 0b | 0 | 9.08 ± 1.04ab |
3 mg/L GA | 8.29 ± 2.82 | 1.24 ± 0.88a | 0.18 ± 0.36bc | 0.24 ± 0.49ab | 0 | 9.95 ± 2.37ab |
5 mg/L GA | 8.99 ± 3.27 | 0.60 ± 0.72ab | 0c | 0b | 0 | 9.59 ± 3.82ab |
1 mg/L TDZ | 8.15 ± 1.69 | 0.18 ± 0.36ab | 0c | 0b | 0 | 8.33 ± 1.71b |
3 mg/L TDZ | 8.69 ± 3.57 | 0.36 ± 0.42ab | 0.55 ± 1.11ab | 0b | 0 | 9.62 ± 3.41ab |
5 mg/L TDZ | 8.97 ± 1.39 | 0b | 0c | 0b | 0 | 8.97 ± 1.39ab |
Different letters in each column show significant differences at P < 0.05 (DMRT). Each mean value is determined by stereomicroscopic examination.
Our findings agreed with those of several previous researchers who have described the asymbiotic seed germination of other terrestrial orchid species and found low germination and slow development. Stewart and Kane (2006b) reported that seeds of H. macroceratitis placed on ML and MM media supplemented with BAP only attained stage 4 protocorms within 16 weeks. Similarly, Piyatrakul et al. (2014) observed that only 5.48% of H. rhodocheila seeds germinated on a modified VW medium (CMU1 with 0.1 mg/L NAA and 1 mg/L BAP added) after 20 weeks, and no stage 5 protocorms were observed. However, Thammavongsa et al. (2022) reported a seed germination range of 15.78–27.92% of the same orchid species on ½VW medium with the presence of stage 5 protocorms.
Symbiotic seed germination
We obtained thirty-five fungal isolates from the roots and rhizomes of H. janellehayneana at the vegetative and reproductive stages. The hyphae were noticed after seven days of culture. The morphological characteristics of these isolates on PDA were white, light purple to yellow in color, and some were identified as Rhizoctonia-like fungi according to Sneh et al. (1991). The results of co-culture of H. janellehayneana seeds with all 35 fungi isolates for 16 weeks are shown in Table 3. Only seeds inoculated with one of two fungal isolates, namely SUT-HJ-I04 and SUT-HJ-I35, began to swell and germinate. Seeds treated with the SUT-HJ-I35 isolate exhibited the highest germination rate (14.03%), which was significantly higher compared to that for the other isolates, and they reached stage 3 protocorms, whereas the seeds treated with SUT-HJ-I04 stopped developing at stage 2, suggesting high mycorrhizal specificity or potentially a requirement for mycobiont switch (Umata et al., 2022). The results of BLAST searches using the ITS sequence data from these two fungal isolates are shown in Table 4. The BLAST search identified SUT-HJ-I04 and SUT-HJ-I35 as Colletotrichum boninense and Aspergillus terreus, with 99.85% and 100.00% identity, respectively (Table 4). Further phylogenetic analysis based on multiple gene sequences indicated that SUT-HJ-I35 was grouped with A. terreus indeed (Fig. 3) but isolate SUT-HJ-I04 should be identified as C. karstii (Fig. 4). Our data suggest that these non-mycorrhizal fungi are more important for seed germination than previously thought.
Table 3. Effect of fungal isolates on germination and development of H. janellehayneana seeds for 16 weeks
Treatment | Stage 1 (%) | Stage 2 (%) | Stage 3 (%) | Stage 4 (%) | Stage 5 (%) | Total (%) |
OMA | 5.25 ± 0.86b | 0.67 ± 0.45 | 0.22 ± 0.44 | 0 | 0 | 6.15 ± 0.92c |
OMA + HJ-I04 | 10.10 ± 1.66a | 0.89 ± 0.72 | 0 | 0 | 0 | 11.00 ± 1.78b |
OMA + HJ-I35 | 10.87 ± 2.58a | 2.24 ± 1.94 | 0.91 ± 1.06 | 0 | 0 | 14.03 ± 1.03a |
Different letters in each column show significant differences at P < 0.05 (DMRT). Each mean value is determined by stereomicroscopic examination.
Table 4. BLAST searches using the ITS sequence data of fungal isolates from H. janellehayneiana.
Isolate | Accession no. | Identity (%) | BLAST search result (Accession no./ taxonomic affiliation) |
SUT-HJ-I4 | OR074487 | 99.84 | Colletotrichum boninense (MF076585.1)/Glomerellales |
SUT-HJ-I35 | OR074489 | 100.00 | Aspergillus terreus DTO 403-C9 (MT316343.1)/Eurotiales
|
The finding that Colletotrichum and Aspergillus have a role in seed germination of H. janellehayneana is consistent with prior work. Non-mycorrhizal fungi species, including Colletotrichum, Aspergillus, Alternaria, Penicilli, Trichoderma and Fusarium species, have been isolated from many orchid species (Cig et al., 2018; Kompe et al., 2022; Alomía et al., 2022). Endophytic Colletotrichum fungi from Bletilla ochracea (Tao et al., 2013), Dendrobium spp. (Chen et al., 2012; Ma et al., 2018; Meng et al., 2019; Sarsaiya et al., 2020) and Pogoniopsis schenckii (Sisti et al., 2019) have been reported. Despite its high pathogenicity on seedlings, Shah et al. (2019) reported that Colletotrichum enhanced the growth of adult individuals of Dendrobium species. Aspergillus fungi, on the other hand, are not yet known to promote seed germination in orchids (Ma et al., 2015; Cig et al., 2018; Kompe et al., 2022). Moreover, A. fumigatus was reported as an opportunistic orchid pathogen in Laelia orchids (Almanza-Álvarez et al., 2017).
Fig. 3. Maximum Likelihood (ML) tree obtained based on phylogenetic analysis of ITS and tub2 sequence data of the isolate SUT-HJ-I35 and Aspergillus section Terrei. Numbers above branches are bootstrap values. Only values above 50% are indicated. The species A. neoflavipes NRRL5504 in section Flavipes was selected as an outgroup.
Fig. 4. Maximum Likelihood (ML) tree obtained based on phylogenetic analysis of concatenated sequences of the act, chs-1, gadph, ITS and tub2 genes of the isolate SUT-HJ-I04 and Colletotrichum boninense species complex. Numbers above branches are bootstrap values. Only values above 50% are indicated. The species Colletotrichum gloeosporioides species complex was selected as an outgroup.
More research is needed to assess the potential physiological and ecological benefits of non-mycorrhizal fungi commonly found in orchid roots. Some fungi produce active substances that may benefit orchids by increasing their tolerance to abiotic stress, allowing them to adapt to a variety of environmental circumstances or fighting to pathogens and insects (Ma et al., 2015). Some fungi may even breakdown local soils and offer nutrients for orchid growth and development (Li et al., 2021). Using the appropriate fungal strain may improve germination success.
Since all orchids rely on mycorrhizal partners to germinate naturally, symbiotic germination is now a widely employed technique and helpful strategy for terrestrial orchid conservation efforts. The symbiotic technique has been successfully applied to germinate three Habenaria species from Florida, USA, including H. repens, H. quinquiseta, and H. macroceratitis, with germination percentages ranging from 5.8–55.1%. The highest germination rates for all species were achieved using a Ceratorhiza isolate (Stewart and Zettler, 2002). Only H. repens seedlings developed stage 5, while no of H. quinquiseta or H. macroceratitis seeds developed beyond stage 2. Similar to their results, our study showed that none of the seedlings of H. janellehayneana inoculated with Colletotrichum or Aspergillus developed beyond the stage 2 or stage 3, respectively. Further investigations should explore how such seedlings can continue development thereafter. Studies on other orchid species have documented a need for multiple fungal species to achieve full development. For example, Chutima et al. (2011) showed that endophytic fungi isolated from Pecteilis susannae (L.) Rafin. enhanced seed germination up to 86.20% when the seeds were also grown with Epulorhiza sp. Similarly, a combination of Ceratobasidium sp., Flavodon sp., and Tulasnella sp. isolates induced significantly higher germination rates in Paphiopedilum villosum (Lindl.) Stein. as compared with uninoculated control treatments (Khamchatra et al., 2016). In addition, using Ceratobasidium strains achieved a high germination frequencies of up to 80% whereas Tulasnella strains supported a germination percentages close to 60% (Alomía et al., 2017).
CONCLUSION
For asymbiotic seed germination of H. janellehayneana, the highest germination percentages were obtained on ½VW or with the addition of 1 mg/L BAP, and seeds on this medium developed to stage 4 protocorms within 10 weeks. In the case of symbiotic seed germination, however, two non-mycorrhizal endophyte fungi isolates obtained from the roots of wild-grown adult H. janellehayneana plants promoted seed germination via a symbiotic effect in co-culture. This research suggests that these fungal isolated may be effective for symbiotic early seed germination of this orchid species, but they are less effective for further growth. More specific mycorrhizal fungi might be needed for seed germination enhancement and onward development of this (and other) terrestrial orchid species. Nevertheless, orchid growers may achieve more consistent results in the propagation of this terrestrial orchid using asymbiotic germination.
ACKNOWLEDGMENT
The work was supported by Suranaree University of Technology, Thailand Research and Innovation (TSRI), National Science, Research and Innovation Fund (NSRF) (No.160357), and Ministry of Science and Technology (MOST).
Author Contributions
Theera Thummavongsa: experimental work, data collection, data analysis, and writing the first draft of the manuscript. Chuthapond Musimun: experimental work, methodology assistance, data collection. Santi Watthana: study design and revision of the manuscript. Stephan Gale: discussion and revision of the manuscript, Rattaket Choeyklin: Molecular fungi identification, Natthawut Wiriyathanawudhiwong: Molecular fungi identification, Nooduan Muangsan: study design, result interpretation, writing, and manuscript revision.
Conflict of interest
The authors declare no conflicts of interest.
Literature Cited
Abebe, Z., Mengesha, A., Teressa, A. and Tefera, W. 2009. Efficient in vitro multiplication
protocol for Vanilla planifolia using nodal explants in Ethiopia. African Journal of Biotechnology, 8 (24): 6817-6821.
Ackerman, J.D., Phillips, R.D., Tremblay, R.L., Karremans, A., Reiter, N., Peter, C.I.,
Bogarín, D., Pérez-Escobar, O.A. and Liu, H. 2023. Beyond the various contrivances by which orchids are pollinated: global patterns in orchid pollination biology. Botanical Journal of the Linnean Society, boac082. https://doi.org/10.1093/botlinnean/boac082
Almanza-Álvarez, J., Garibay-Orijel, R., Salgado-Garciglia, R., Fernández-Pavía, S.P.,
Lappe-Olivera, P., Arellano-Torres, E. And Ávila-Díaz, I. 2017. Identification and control of pathogenic fungi in neotropical valued orchids (Laelia spp.). Tropical Plant Pathology, 42: 339–351.
Alomía,Y.A., Mosquera-E, A.T., Flanagan, N.S. and Otero, J. 2017. Seed viability and
symbiotic seed germination in Vanilla spp. (Orchidaceae). Research Journal of Seed Science, 10: 43–52.
Alomía, Y.A., Otero, J., Jersáková, J. and Stevenson, P.R. 2022. Cultivable fungal
community associated with the tropical orchid Dichaea andina. Fungal Ecology, 57–58: https://doi.org/10.1016/j.funeco.2022.101158.
Altschul, S.F., Madden, T.L., Shaffer, A.A., Zhang, J., Zhang, Z., Miller, M. and Lipman, D.J. 1997. Gapped BLAST and PSI-BLAST: A New Generation of Protein Database Search Programs. Nucleic Acids Research, 25: 3389-3402.
Arditti, J. and Ghani, A.K.A. 2000. Erratum: Numerical and physical properties of orchid seeds and their biological implications. New Phytologist, 145: 367-421. https://doi.org/10.1046/j.1469-8137.2000.00675.x.
Batista, J.A., Borges, K.S., de Faria, M.W., Proite, K., Ramalho, A.J., Salazar, G.A. and van den Berg, C. 2013. Molecular phylogenetics of the species rich genus Habenaria (Orchidaceae) in the New World based on nuclear and plastid DNA sequences. Molecular Phylogenetics and Evolution, 67(1): 95-109. https://doi.org/10.1016/j.ympev.2013.01.008.
Bellemain, E., Carlsen, T., Brochmann, C., Coissac, E., Taberlet, P. and Kauserud, H. 2010. ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases. BMC microbiology, 10: 1-9.
Carbone, I. and Kohn, L.M. 1999. A method for designing primer sets for speciation studies in filamentous ascomycetes. Mycologia, 91: 553–556.
Chen, X.M., Dong, H.L., Hu, K.X., Sun, Z.R., Chen, J. and Guo, S.X. 2010. Diversity and antimicrobial and plant-growth-promoting activities of endophytic fungi in Dendrobium loddigesii Rolfe. Journal of Plant Growth Regulation, 29: 328-337.
Choltco, T.C., Moloney, B. and Yong Gee, G. 2017. A new Habenaria from northern Thailand (Subfamily: Orchidoideae Tribe: Orchideae Subtribe: Orchidinae). Orchideen Journal, 4-5: 1-4.
Christenhusz, M.J.M. and Byng, J.W. 2016. The number of known plants species in the world and its annual increase. Phytotaxa, 261 (3): 201-217. Doi:10.11646/phytotaxa.261.3.1
Chutima, R., Dell, B., Vessabutr, S., Bussaban, B. and Lumyong, S. 2011. Endophytic fungi from Pecteilis susannae (L.) Rafin (Orchidaceae), a threatened terrestrial orchid in Thailand. Mycorrhiza, 21: 221–229.
Cig, A., Demiler Durak, E. and Işler, S. 2018. In vitro symbiotic germination potentials of some Anacamptis, Dactylorhiza, Orchis and Ophrys terrestrial orchid species. Applied Ecology and Environmental Research, 16: 5141-5155. 10.15666/aeer/1604_51415155
Fay, M.F. 1992. Conservation of rare and endangered plants using in vitro methods. In Vitro Cellular & Developmental Biology. Plant, 28P(1): 1–4. http://www.jstor.org/stable/20064802
Fay, M.F. 2018. Orchid conservation: how can we meet the challenges in the twenty-
first century?. Botanical Studies, 59: 16. https://doi.org/10.1186/s40529-018-0232-z
Gale, S.W., Fischer, G.A., Cribb, P.J. and Fay, M.F. 2018. Orchid conservation: bridging the gap between science and practice. Botanical Journal of the Linnean Society, 186: 425–434.
Gardes, M. And Bruns, T.D. 2013. ITS primers with enhanced specificity for basidiomycetes-application to the identification of mycorrhizae and rusts. Molecular Ecology, 2: 113–118.
Glass, L.N. and Donaldson, G.C. 1995. Development of primer sets designed for use with the PCR to amplify conserved genes from Filamentous Ascomycetes. American Society of Microbiology, 61: 1320–1330.
Govaerts, R., Dransfield, J., Zona, S., Hodel, D.R. and Henderson, A. 2019. World checklist of Orchidaceae. Facilitated by the Royal Botanic Gardens, Kew. Published on the Internet; Retrieved from http://wcsp.science.kew.org/ Accessed on 05-06-2022.
Guerber, J.C.; Liu, B.; Correll, J.C. and Johnston, P.R. 2003. Characterization of diversity in Colletotrichum acutatum sensu lato by sequence analysis of two gene introns, mtDNA and intron RFLPs, and mating compatibility. Mycologia, 95: 872–895.
Hall, T.A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series, 41: 95–98.
International Cooperation and Cooperation Group Wildlife and Wild Flora Protection Division. 2013. CITES Conserved Plants (CITES): Wild Orchids in the Eastern Forest Part 1 under the Convention Department of National Parks, Wildlife and Plant Conservation; Edited [by] Arporn Udomsilp, Bangkok.
Keel, B.G., Zettler, L.W. and Kaplin, B.A. 2011. Seed germination of Habenaria repens
(Orchidaceae) in situ beyond its range, and its potential for assisted migration imposed by climate change. Castanea, 76 (1): 43–54.
Khamchatra, N., Dixon, K.W., Tantiwiwat, S. and Piapukiew, J. 2016. Symbiotic seed germination of an endangered epiphytic slipper orchid, Paphiopedium villosum (Lindl.) Stein. from Thailand. South African Journal of Botany, 104: 76-81.
Lauzer, D., St-Arnaud, M. and Barabe, D. 1994. Tetrazolium staining and in vitro germination of mature seeds of Cypripedium acaule (Orchidaceae). Lindleyana, 9: 197-204.
Li, T., Yang, W., Wu, S., Selosse, M.A. and Gao, J. 2021. Progress and prospects of mycorrhizal fungal diversity in orchids. Frontiers in Plant Sciences, 12: 646325. https://doi.org/10.3389/fpls.2021.646325
Ma, X., Nontachaiyapoom, S., Jayawardena, R.S., Hyde, K.D., Gentekaki, E., Zhou, S., Qian, Y., Wen, T. and Kang, J. 2018. Endophytic Colletotrichum species from Dendrobium spp. in China and Northern Thailand. MycoKeys, 43: 23-57. https://doi.org/10.3897/mycokeys.43.25081
Meng, Y.Y., Shao, S.C., Liu, S.J. and Gao, J.Y. 2019. Do the fungi associated with roots of adult plants support seed germination? A case study on Dendrobium exile (Orchidaceae). Global Ecology and Conservation, 17: e00584.
Mohanty, P., Paul, S., Das, M.C., Kumaria, S. and Tandon, P. 2012. A simple and efficient
protocol for the mass propagation of Cymbidium mastersii: an ornamental orchid of Northeast India. AoB Plants, pls023. doi: 10.1093/aobpla/pls023.
Murashige, T. and Skoog, F.A. 1962. Revised medium for rapid growth and bioassays with
tobacco tissue 354 cultures. Physiologia Plantarum, 15: 473-497.
Neiland, M.R.M. and Wilcock, C.C. 1998. Fruit set, nectar reward, and rarity in the
Orchidaceae. American Journal of Botany, 85(12): 1657–1671. https://doi.org/10.2307/2446499
Nongdam, P., Beleski, D.G., Tikendra, L., Dey, A., Varte, V., EL Merzougui, S., Pereira,
V.M., Barros, P.R. and Vendrame, W.A. 2023. Orchid micropropagation using conventional semi-solid and temporary immersion systems: A review. Plants, 12(5): 1136. https://doi.org/10.3390/plants12051136
Özdener Kömpe, Y., Akin Mutlu, V., Özkoç, İ., Demiray, S. and Serhat, B. 2022. Fungal
diversity and ex vitro symbiotic germination of Serapias vomeracea (Orchidaceae). Acta Botanica Croatica, 81 (1): 108-116. https://doi.org/10.37427/botcro-2022-008
Paek, K.Y., Hahn, E.J. and Park, S.Y. 2011. Micropropagation of Phalaenopsis orchids via
protocorms and protocorm-like bodies. In: Thorpe, T., Yeung, E. (eds) Plant Embryo Culture. Methods in Molecular Biology, 710. Humana Press. https://doi.org/10.1007/978-1-61737-988-8_20
POWO. 2023. "Plants of the World Online. Facilitated by the Royal Botanic Gardens,
Kew. Published on the Internet; http://www.plantsoftheworldonline.org/
Retrieved 01 June 2023."
Pridgeon, A. 2001. Genera Orchidacearum: Orchidoideae (part 1).
Piyatrakul, P. 2014. Factors influencing germination and seedling development of Habenaria rhodocheila Hance. Thesis master’s degree. Chiang Mai University.
Rasmussen, H.N., Dixon, K.W., Jersáková, J. and Těšitelová, T. 2015. Germination and seedling establishment in orchids: a complex of requirements. Annals of Botany, 116: 391–402. https://doi.org/10.1093/aob/mcv087
Sangmanee, P., Shutsrirung, A. and Potepohn, N. 2012. Effects of mycorrhizas on growth of terrestrial orchid Habenaria erichmichelii Christenson. Journal of Agriculture, 28(3): 237-244. (In Thai) http://cmuir.cmu.ac.th/jspui/handle/6653943832/64334
Sarsaiya, S., Jain, A., Jia, Q., Fan, X., Shu, F., Chen, Z., Zhou, Q., Shi, J. and Chen, J. 2020. Molecular identification of endophytic fungi and their pathogenicity evaluation against Dendrobium nobile and Dendrobium officinale. International Journal of Molecular Sciences, 21(1):316. https://doi.org/10.3390/ijms21010316
Setiaji, A., Annisa, R., Santoso, A.D., Kinasih, A. and Riyadi, A. 2021. Review: Factors affecting mass propagation of Vanda orchid in vitro. Cell biology and Development, 5 (2): 51-62. https://doi.org/10.13057/cellbioldev/v050201
Shah, S., Shrestha, R., Maharjan, S., Selosse, M.A. and Pant, B. 2018. Isolation and
characterization of plant growth-promoting endophytic fungi from the roots of Dendrobium moniliforme. Plants (Basel), 8(1): 5. doi: 10.3390/plants8010005.
Sisti, L.S., Flores-Borges, D.N.A., de Andrade, S.A.L., Koehler, S., Bonatelli, M.L.,
Mayer, J.L.S. 2019. The role of non-mycorrhizal fungi in germination of the mycoheterotrophic orchid Pogoniopsis schenckii Cogn. Frontiers in Plant Science, 10: 1589. doi: 10.3389/fpls.2019.01589.
Sneh, B., Burpee, L. and Ogoshi, A. 1991. Identification of Rhizoctonia species. St. Paul,
Minnesota: APS Press, pp. 2.
Stamatakis, A. 2014. RAxML version 8: A tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics, 30: 1312–1313. https://doi.org/10.1093/ bioinformatics/btu033
Stewart, S. and Kane, M. 2006a. Symbiotic seed germination of Habenaria
macroceratitis (Orchidaceae), a rare Florida terrestrial orchid Plant Cell, Tissue and Organ Culture, 86: 159-167.
Stewart, S. and Kane, M. 2006b. Asymbiotic seed germination and in vitro seedling
development of Habenaria macroceratitis (Orchidaceae), a rare Florida terrestrial orchid. Plant Cell, Tissue and Organ Culture, 86: 147-158.
Stewart, S. and Kane, M. 2007. Symbiotic seed germination and evidence for in vitro mycobiont specificity in Spiranthes brevilabris (Orchidaceae) and its implication for species-level conservation. In Vitro Cellular and Developmental Biology, 43: 178-186.
Stewart, S.L. and Zettler, L.W. 2002. Symbiotic germination of three semi-aquatic rein
orchids (Habenaria repens, H. quinqueseta, H. macroceratitis) from Florida. Aquatic Botany, 72(1): 25-35.
Swarts, N.D. and Dixon, K.W. 2009. Terrestrial orchid conservation in the age of
extinction. Annals of Botany, 104(3): 543-556. https://doi.org/10.1093/aob/mcp025
Tao, G., Liu, Z.Y., Liu, F., Gao, Y.H. and Cai, L. 2013. Endophytic Colletotrichum
species from Bletilla ochracea (Orchidaceae), with descriptions of seven new
species. Fungal Diversity, 61: 139–164.http://doi.org/10.1007/s13225-013-0254-5
Thompson, J.D., Higgins, D.G. and Gibson, T.J. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research, 22(22): 4673-80. doi: 10.1093/nar/22.22.4673. PMID: 7984417; PMCID: PMC308517.
Thummavongsa, T., Watthana, S., Musimun, C. and Muangsan, N. 2022. Asymbiotic
germination of Habenaria rhodocheila Hance on different culture media and impact of plant growth regulators. Asia-Pacific Journal of Science and Technology, 27(05): APST–27. https://doi.org/10.14456/apst.2022.82
Umata, H., Ota, Y., Gale, S. W., Chuman, S., Nishi, M., Ashihara, S. and Yagi, F. 2022. Spatial separation of mycobionts in the giant, differentiated root system of Cyrtosia septentrionalis, a fully myco-heterotrophic orchid. Botany, 100: 813–825.
Vujanovic, V., St-Arnaud, M., Barabé, D. and Thibeault, G. 2000. Viability testing of orchid seed and the promotion of colouration and germination. Annals of Botany, 86 (1): 79-86. https://doi.org/10.1006/anbo.2000.1162
White, T., Bruns, T., Lee, S., Taylor, J., Innis, M., Gelfand, D. and Sninsky, J. 1990 Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In PCR Protocols; Academic Press: San Diego, CA, USA; Volume 31, pp. 315–322.
Yam, T. and Arditti, J. 2009. History of orchid propagation: A mirror of the history of
biotechnology. Plant Biotechnology Reports, 3: 1-56. https://doi.org/10.1007/s11816-008-0066-3.
Yeh, C.M., Chung, K., Liang, C.K. and Tsai, W.C. 2019. New insights into the symbiotic
relationship between orchids and fungi. Applied Sciences, 9(3): 585. https://doi.org/10.3390/app9030585
Youlian, Y., Cai, L., Yu, Z., Liu, Z. and Hyde, K. 2011. Colletotrichum species on
Orchidaceae in Southwest China. Cryptogamie, Mycologie, 32: 229-253. https://doi.org/10.7872/crym.v32.iss3.2011.229
Zanello, C.A., Duarte, W.N., Gomes, D.M. and Cardoso, J.C. 2022. Micropropagation from
inflorescence nodal segments of Phalaenopsis and acclimatization of plantlets using different substrates. Horticulturae, 8: 340. https://doi.org/10.3390/horticulturae8040340
Zeng, S., Huang, W., Wu, K., Zhang, J., da Silva, J.A. and Duan, J. 2016. In vitro
propagation of Paphiopedilum orchids. Critical Reviews in Biotechnology, 36(3): 521-34. doi: 10.3109/07388551.2014.993585.
Zhang, W. and Gao, J. 2021. A comparative study on the reproductive success of two
rewarding Habenaria species (Orchidaceae) occurring in roadside verge habitats. BMC Plant Biology, 21(1): 187. https://doi.org/10.1186/s12870-021-02968-w.
Zhu, G.S., Yu, Z.N., Gui, Y. And Liu, Z.Y. 2008. A novel technique for isolating orchid
mycorrhizal fungi. Fungal Diversity, 33: 123-137.