مطالعه چندشکلی ژن DGAT1 و ارتباط آن با صفات لاشه در گوسفندان نژادهای ایرانی لری-بختیاری و زل
Subject Areas : Camelم. صادقی 1 , م. مخبر 2 , م. مرادی-شهر بابک 3 , و. سلطانی 4 , م. بهروزلک 5
1 - Department of Animal Science, College of Agriculture and Natural Resources, University of Tehran, Karaj, Iran
2 - Department of Animal Science, Faculty of Agriculture, Urmia University, Urmia, Iran
3 - Department of Animal Science, College of Agriculture and Natural Resources, University of Tehran, Karaj, Iran
4 - Department of Animal Science, College of Agriculture and Natural Resources, University of Tehran, Karaj, Iran
5 - Department of Animal Science, Faculty of Agriculture, Payame Noor University, Tehran, Iran
Keywords: ایران, PCR-SSCP, گوسفند, زل, ژن <i>DGAT1</i>, لری-بختیاری,
Abstract :
دی آسیل گلیسرول آسیل ترانسفراز1 (DGAT1) نقش مهمی در متابولیسم تریگلیسریدها دارد و مرحله پایانی مسیر سنتز تریگلیسرید در حیوانات را کاتالیز میکند. هدف مطالعه حاضر بررسی چندشکلیهای تک نوکلئوتیدی (SNPs) در نواحی 5'UTR، اگزون 1 و اگزون 2 در دو نژاد گوسفند بومی ایران بود. به این منظور، از تعداد 309 حیوان شامل گوسفند دنبه دار لری-بختیاری (n=152) و گوسفند بدون دنبه زل (n=157) استفاده شد. الگوهای ژنوتیپی با استفاده از تکنیک PCR-SSCP شناسایی شد. پنج الگوی ژنوتیپی در نواحی 5'UTR و اگزون 1 شناسایی شد. وجود تفاوت در الگوهای مختلف با استفاده از تکنیک توالییابی تأیید گردید. نتایج توالییابی حاکی از وجود سه پلیمورفیسم در نواحی 5'UTR و اگزون 1 نژادهای مورد بررسی بود. از میان نواحی دارای چندشکلی، تنها جایگزینی مربوط به موقعیت 277 در اگزون 1 منجر به تغییر اسید آمینه آرژنین به گلایسین شد (p.Arg26Gly). ارتباط معنیداری (P<0.05) بین ژنوتیپهای شناسایی شده در نژاد لری-بختیاری و وزن دنبه (FTW) و ضخامت چربی پشت (BFT) وجود داشت و حیوانات با الگوی ژنوتیپی G5 عملکرد بالاتری نسبت به الگوی ژنوتیپیG1 داشتند. این دو الگوی ژنوتیپی یا هاپلوتیپ تنها در موقعیت 101 ناحیه 5'UTR تفاوت دارند. هیچ ارتباط معنیداری (05/0P<) بین الگوهای ژنوتیپی مشاهده شده (قطعه 5'UTR و اگزون 1) و صفات لاشه نژاد زل مشاهده نشد. این نتایج نشان داد که SNPهای جدید شناسایی شده DGAT1 اثر معنیداری بر روی صفات لاشه دارند و میتوانند به عنوان نشانگر برای این صفات استفاده شوند.
An X.P., Hou J.X., Zhao H.B., Bai L., Peng J.Y., Zhu C.M., Yan Q.M., Song Y.X., Wang J.G. and Cao B.Y. (2013). Polymorphism identification in goat DGAT1 and STAT5A genes and association with milk production traits. Czech J. Anim. Sci. 58, 321-327.
Anton I., Kovacs K., Hollo G., Farkas V., Lehel L., Hajda Z. and Zsolnai A. (2010). Effect of leptin, DGAT1 and TG gene polymorphisms on the intramuscular fat of Angus cattle in Hungary. Livest. Sci. 11, 243-249.
Ardicli S., Dincel D., Samli H. and Balci F. (2017). Effects of polymorphisms at LEP, CAST, CAPN1, GHR, FABP4 and DGAT1 genes on fattening performance and carcass traits in Simmental bulls. Arch Tierz. 60(2), 61-70.
Banos G., Woolliams J., Woodward B., Forbes A. and Coffey M. (2008). Impact of single nucleotide polymorphisms in leptin, leptin receptor, growth hormone receptor, and diacylglycerol acyltransferase (DGAT1) gene loci on milk production, feed, and body energy traits of UK dairy cows. J. Dairy Sci. 91, 3190-3200.
Cerit H., Dumen E. and Sezgin F.H. (2014). Comparison of DGAT1 K232A polymorphism and its effects on some milk quality parameters in Holstein and Native Black Race cattles. Kafkas Univ. Vet. Fak. Derg. 20, 301-305.
Coppieters W., Riquet J., Arranz J.J., Berzi P., Cambisano N., Grisart B. Karim L., Marcq F., Moreau L. and Nezer C. (1998). A QTL with major effect on milk yield and composition maps to bovine chromosome 14. Mamm. Genome. 9, 540-544.
Dekkers J.C. (2004). Commercial application of marker and gene-assisted selection in livestock: strategies and lessons. J. Anim. Sci. 82, 313-328.
Grisart B., Coppieters W., Farnir F., Karim L., Ford C., Berzi P., Cambisano N., Mni M., Reid S., Simon P., Spelman R., Georges M. and Snell R. (2002). Positional candidate cloning of a QLT in dairy cattle: Identification of a missense mutation in the bovine DGAT1 gene with major effect on milk yield and composition. Genome Res. 12, 222-231.
Hatzopoulos P., Banilas G., Karampelias M., Makariti I. and Kourti A. (2011). The olive DGAT2 gene is developmentally regu-lated and shares overlapping but distinct expression patterns with DGAT1. J. Exp. Bot. 62, 521-532.
Kamalzadeh A., Rajabaigy M. and Kiasat A. (2008). Livestock production systems and trends in livestock industry in Iran. J. Agric. Soc. Sci. 4, 183-188.
Kianzad M.R., Panandam J.M., Emamjomeh Kashan N., Jelan Z.A. and Dahlan I. (2003). Reproductive performance of three Iranian sheep breeds. Asian-Australian J. Anim. Sci. 16, 11-14.
Kosgey I.S., Baker R.L., Udod H.M.J. and Van-Arendonk J.A.M. (2006). Successes and failures of small ruminant breeding programmes in the tropics: a review. Small Rumin. Res. 61, 13-28.
Li J., Xu X., Zhang Q., Wang X., Deng G., Fang X., Gao X., Ren H. and Xua S. (2009). Association between single nucleotide polymorphisms in the Dgat2 gene and beef carcass and quality traits in commercial feedlot steers. Asian-Australasian J. Anim. Sci. 22, 943-954.
Li X., Ekerljung M., Lundstrom K. and Lunden A. (2013). Association of polymorphisms at DGAT1, leptin, SCD1, CAPN1 and CAST genes with color, marbling and water holding capacity in meat from beef cattle populations in Sweden. Meat Sci. 94, 153-158.
Martin P., Palhière I., Maroteau C., Bardou P., Canale-Tabet K., Sarry J., Woloszyn F., Bertrand-Michel J., Racke I. and Besir H. (2017). A genome scan for milk production traits in dairy goats reveals two new mutations in Dgat1 reducing milk fat content. Sci. Rep. 7(1), 1-13.
Miller S., Dykes D. and Polesky H. (1988). A simple salting out procedure for extracting DNA from human nucleated cells. Nucleic Acids Res. 16(3), 1215-1224.
Mohammadi H., Moradi-Shahrebabak M. and Sadeghi M. (2013). Association between single nucleotide polymorphism in the ovine DGAT1 gene and carcass traits in two Iranian sheep breeds. Anim. Biotechnol. 24, 159-167.
Nanekarani S., Kolivand M. and Goodarzi M. (2016). Polymorphism of a mutation of DGAT1 gene in Lori sheep breed. J. Adv. Agric. Technol. 3(1), 38-41.
Noshahr F.A. and Rafat A. (2014). Polymorphism of DGAT1 gene and its relationship with carcass weight and dressing percentage in Moghani sheep breed. Iranian J. Appl. Anim. Sci. 4(2), 331-334.
Pannier L., Mullen A.M., Hamill R.M., Stapleton P.C. and Sweeney T. (2010). Association analysis of single nucleotide polymorphisms in DGAT1, TG and FABP4 genes and intramuscular fat in crossbred Bos taurus cattle. Meat Sci. 85, 515-518.
Peakall R. and Smouse P.E. (2006). GENALEX 6: genetic analysis in excel. Population genetic software for teaching and research. Mol. Ecol. Notes. 6, 288-295.
SAS Institute. (2007). SAS®/STAT Software, Release 9.1. SAS Institute, Inc., Cary, NC. USA.
Scata M.C., Napolitano F., Casu S., Carta A., De-Matteis G., Signorelli F., Annicchiarico G., Catillo G. and Moioli B. (2009). Ovine acyl CoA: Diacylglycerol acyltransferase 1 – molecular characterization, polymorphisms and association with milk traits. Anim. Genet. 40, 737-742.
Signorelli F., Orru L., Napllitano F., Matteis G.D., Scata M.C., Catillo G., Marchitelli C. and Moioli, B. (2009). Exploring polymorphisms and effects on milk traits of the DGAT1, SCD1 and GHR genes in four cattle breeds. Livest. Sci. 125, 74-79.
Souza F.R.P., Mercadante M.E.Z., Fonseca L.F.S., Ferreira L.M.S., Regatieri I.C., Ayres D.R., Tonhati H., Silva S.L., Razook A.G. and Albuquerque L.G. (2010). Assessment of DGAT1 and LEP gene polymorphisms in three Nelore (Bos indicus) lines selected for growth and their relationship with growth and carcass traits. J. Anim. Sci. 88, 435-441.
Tăbăran A., Mihaiu M., Dan S.D., Reget O., Pivariu B., Cordis I., Cordea D. and Muresan C. (2014). Identification of polymorphism in goat and sheep DGAT1 gene associated with milk production traits. Bull. UASVM Vet. Med. 71(2), 283-286.
Tait R.G., Shackelford S.D., Wheeler T.L., King D.A., Keele J.W., Casas E., Smith T.P. and Bennett G.L. (2014). CAPN1, CAST, and DGAT1 genetic effects on preweaning performance, carcass quality traits, and residual variance of tenderness in a beef cattle population selected for haplotype and allele equalization. J. Anim. Sci. 92, 5382-5393.
Vatankhah M. and Talebi M.A. (2008). Heritability estimates and correlations between production and reproductive traits in Lori-Bakhtiari sheep in Iran. South African J. Anim. Sci. 38(2), 110-118.
Xu Q.L., Che Y.L., Ma R.X. and Xue P. (2009). Polymorphism of DGAT1 associated with intramuscular fat-mediated tenderness in sheep. J. Sci. Food Agric. 89, 232-237.
Yang J., Manolio T.A., Pasquale L.R., Boerwinkle E., Caporaso N. and Cunningham J.M. (2011). Genome partitioning of genetic variation for complex traits using common SNPs. Nat. Genet. 43, 519-525.
Ye J., Coulouris G., Zaretskaya I., Cutcutache I., Rozen S. and Madden T.L. (2012). Primer-BLAST: A tool to design target-specific primers for polymerase chain reaction. BMC Bioinformatics. 13, 134-142.
Yu Y.H., Zhang Y., Oelkers P., Sturley S.L., Rader D.J. and Ginsberg H.N. (2002). Posttranscriptional control of the expression and function of diacylglycerol acyltransferase-1 in mouse adipocytes. J. Biol. Chem. 277, 50876-50884.
Zhang C.L., Wang Y., Chen H., Lan X. and Lei C. (2007). Enhance the efficiency of single-strand conformation polymorphism analysis by short polyacrylamide gel and modified silver staining. Anal. Biochem. 365(2), 286-287.