Assessment of Genetic Variation using DNA-Based Molecular Markers and Morphological Traits in Vicia L. Species Growing in Iraq
Subject Areas : Research On Crop Ecophysiology
Keywords: Key words: DNA-based markers, Vicia species, Genetic diversity, Morphological attributes, Breeding strategies, Cluster analysis.,
Abstract :
Key words: DNA-based markers, Vicia species, Genetic diversity, Morphological attributes, Breeding strategies, Cluster analysis.
References:
REFERENCES
Aboul-Maaty NAF, Oraby HAS. 2019. Extraction of high-quality genomic DNA from different plant orders applying a modified CTAB-based method. Bulletin of the National Research Centre 43(1): 1–10
Agarwal M, Shrivastava N, Padh, J. 2008. Advances in molecular marker techniques and their applications in plant sciences. Plant Cell Reports, 27(4), 617–631.
Al-Hadeethi MA, Al-Rawi AAF, Al-Taie AT, Al-Zubaidi AH. 2019. Venation pattern and leaf architectures of Cordia myxa L. from Boraginaceae family. Biochemical and Cellular Archives 19(2): 3709–3711
Al-Hadeethi MA, Al-Taie AT, Farman Al-Rawi A. 2021. Anatomical study of Solanum nigrum L. From Solanaceae family growing in IraqJournal of Physics: Conference 1879(2): 6
Al-Hemaid FM, Abdel-Mageed A, Assar ES, Hamed ST. 2015. Utility of nuclear ribosomal DNA (nrDNA) ITS region in resolving phylogenetic relationships within the genus Acacia (Fabaceae). Saudi J. Biol. Sci. 22(4): 452–460.
Al-Joboury K. 2017. Taxonomical study for some species of Vicia L. (Fabaceae family). IOSR J. Agric. Vet. Sci. 12: 61–64.
Arif IA, Bakir MA, Khan HA, Al Farhan AH, Al Hazzani AA, Al Kahtani SH, Bahkali AH. 2010. Molecular tools for the identification and authentication of plant species. Saudi J. Biol. Sci. 17(3): 195–202.
Barkman TJ, Chenery G, McNeal JR, Lyons-Weiler J, Ellisens WJ, Moore G, Wolfe AD, DePamphilis CW. 2000. Independent and combined analyses of sequences from all three genomic compartments converge on the root of flowering plant phylogeny. Proceedings of the National Academy of Sciences 97(24): 13166–13171
Bosmali I, Lagiotis G, Haider N, Osathanunkul M, Biliaderis C, Madesis P. 2022. DNA-Based Identification of Eurasian Vicia Species Using Chloroplast and Nuclear DNA Barcodes. Plants 11(7): 947
Bouckaert R, Vaughan TG, Barido-Sottani J, Duchêne S, Fourment M, Gavryushkina A, Heled J, Jones G, Kühnert D, De Maio N, Matschiner M, Mendes FK, Müller NF, Ogilvie HA, du Plessis L, Popinga A, Rambaut A, Rasmussen D, Siveroni I, Suchard MA, Wu CH, Xie D, Zhang C, Stadler T, Drummond AJ. 2019. BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis. PLoS Comput. Biol. 15(4): e1006650. doi: 10.1371/journal.pcbi.1006650.
Fazekas AJ, Burgess KS, Kesanakurti PR, Graham SW, Newmaster SG, Husband BC, Percy DM, Hajibabaei M, Barrett SCH. 2008. Multiple multilocus DNA barcodes from the plastid genome discriminate plant species equally well. PloS One 3(7): 12
Galimberti M, De Mattia F, Sgorbati S. 2012. The advent of molecular methods in plant taxonomy: A review. Plant Biosyst. 146(3): 543–554.
Han S, Sebastin R, Wang X, Lee KJ, Cho GT, Hyun DY, Chung JW. 2021. Identification of Vicia species native to South Korea using molecular and morphological characteristics. Front. Plant Sci. 12: 14.
Hanelt P, Mettin D. 1989. Biosystematics of the genus Vicia L. (Leguminosae). Annu. Rev. Ecol. Syst. 20(1): 199–223.
Kaplan A, Ertekin AS, Gündüzler E. 2021. Molecular Phylogenetic Analysis of Vicia L.(Fabaceae) Taxa Growing in the Southeastern Anatolia Region of Turkey: Based on Internal Transcribed Spacer (ITS). Turkish Journal of Agriculture-Food Science and Technology 9(10): 1831–1839
Koima JK, Kirwa SK, Kirui J. 2023. Molecular techniques for species identification. East Afr. J. Biol. Environ. Earth Sci. 5(1): 22–32.
Kress WJ. 2017. DNA barcodes and their application to plant identification. In: Lammers TG (Ed.). Plant Systematics: An Integrated Approach (2nd ed.). CRC Press. pp. 243–260.
Li M, Gao LM, Li DZ, Zhang JQ, Yang JB. 2015. A study on DNA barcoding of Chinese Lilium species. Molecules 20(10): 19047–19062.
Manzanilla V, Borsch T, Neinhuis C. 2018. Nuclear ribosomal DNA (nrDNA) markers for phylogenetic and taxonomic studies in plants: A review. Bot. J. Linn. Soc. 187(2): 241–264.
Martínez-Arce A, De Jesús-Navarrete A, Leasi F. 2020. DNA Barcoding for Delimitation of Putative Mexican Marine Nematodes Species. Diversity 12(3):107. https://doi.org/10.3390/d12030107
Mohamad SM. 2010. A comparative systematic study of genus Vicia L. (Family: Papilionaceae) in Iraqi Kurdistan. PhD dissertation, University of Sulaimani, College of Agriculture, Department of Field Crops. 220 pp.
Raveendar S, Lee JR, Park JW, Lee GA, Jeon YA, Lee YJ, Cho GT, Ma KH, Lee SY, Chung JW. 2015. Potential use of ITS2 and matK as a two-locus DNA barcode for Identification of Vicia species. Plant Breed Biotech 3 (1): 58-66
Raveendar S, Lee JR, Shim D, Lee GA, Jeon YA, Cho GT, Ma KH, Lee SY, Sung GH, Chung JW. 2017. Comparative efficacy of four candidate DNA barcode regions for identification of Vicia species. Plant Genetic Resources 15(4): 286–295
Rouhan G, Gaudeul M. 2021. DNA barcoding: An efficient tool for unravelling plant diversity. In: Seelanan MRD (Ed.). Recent Advances in Plant Biology. Vol. 1. IntechOpen. pp. 31–52.
Scotland RW, Olmstead RG, Bennett JR. 2003. Phylogeny reconstruction: The role of morphology. Syst. Biol. 52(4): 539–548. Available at: http://www.jstor.org/stable/3651141
Shafqat M, Qasim F, Nasrullah U, Ahmad M, Hussain M, Ali H, Noreen S, Qasim MW. 2020. DNA barcoding in plants and current molecular issues. Sch. Int. J. Biochem. 3(3): 53–58.
Shehbala ES. 2021. Molecular phylogeny of the genus Vicia l.(Fabaceae) based on ITS2 and Cox1 housekeeping genes. Genus pp 30
Shiran B, Kiani S, Sehgal D, Hafizi A, Chaudhary M, Raina SN. 2014. Internal transcribed spacer sequences of nuclear ribosomal DNA resolving complex taxonomic history in the genus Vicia L. Genet. Resour. Crop Evol. 61(5): 909–925.
Simpson MG. 2019. Plant systematics (3rd ed.). Academic Press. 774 pp.
Townsend CC, Guest E. 1974. Leguminales. Ministry of Agriculture and Agrarian Reform, Republic of Iraq. 425 pp.
Velazquez E, Silva LR, Peix A. 2010. Legumes: a healthy and ecological source of flavonoids. Curr. Nutr. Food Sci. 6(2): 109–144.
Verma R, Singh HV, Pandey RK. 2022. Molecular markers in plant taxonomy: An overview. J. Pharmacogn. Phytochem. 11(1): 1–5.
Wardani IGAK, Amandita FY, de Melo Moura CC, Gailing O, Siregar IZ. 2022. Molecular taxonomy via DNA barcodes for species identification in selected genera of Fabaceae. Jurnal Pengelolaan Sumberdaya Alam Dan Lingkungan (Journal of Natural Resources and Environmental Management) 12(1): 112–122
Wei Z, Li S, Zhang W, Zhang M, Meng J. 2021. The application of molecular taxonomy in plant classification and evolution. Front. Plant Sci. 12: 730623.
Willis KJ. 2017. State of the World’s Plants 2017. Report. Royal Botanic Gardens, Kew, p.96
Wu FF, Sun W, Liu F, Gao Q, Jin M, Liu B, Wang XG. 2021. Phylogenetic relationships in Vicia subgenus Vicilla (Fabaceae) based on combined evidence from DNA sequences. Legume Res. 44(8): 882–887.
REFERENCES
Aboul-Maaty NAF, Oraby HAS. 2019. Extraction of high-quality genomic DNA from different plant orders applying a modified CTAB-based method. Bulletin of the National Research Centre 43(1): 1–10
Agarwal M, Shrivastava N, Padh, J. 2008. Advances in molecular marker techniques and their applications in plant sciences. Plant Cell Reports, 27(4), 617–631.
Al-Hadeethi MA, Al-Rawi AAF, Al-Taie AT, Al-Zubaidi AH. 2019. Venation pattern and leaf architectures of Cordia myxa L. from Boraginaceae family. Biochemical and Cellular Archives 19(2): 3709–3711
Al-Hadeethi MA, Al-Taie AT, Farman Al-Rawi A. 2021. Anatomical study of Solanum nigrum L. From Solanaceae family growing in IraqJournal of Physics: Conference 1879(2): 6
Al-Hemaid FM, Abdel-Mageed A, Assar ES, Hamed ST. 2015. Utility of nuclear ribosomal DNA (nrDNA) ITS region in resolving phylogenetic relationships within the genus Acacia (Fabaceae). Saudi J. Biol. Sci. 22(4): 452–460.
Al-Joboury K. 2017. Taxonomical study for some species of Vicia L. (Fabaceae family). IOSR J. Agric. Vet. Sci. 12: 61–64.
Arif IA, Bakir MA, Khan HA, Al Farhan AH, Al Hazzani AA, Al Kahtani SH, Bahkali AH. 2010. Molecular tools for the identification and authentication of plant species. Saudi J. Biol. Sci. 17(3): 195–202.
Barkman TJ, Chenery G, McNeal JR, Lyons-Weiler J, Ellisens WJ, Moore G, Wolfe AD, DePamphilis CW. 2000. Independent and combined analyses of sequences from all three genomic compartments converge on the root of flowering plant phylogeny. Proceedings of the National Academy of Sciences 97(24): 13166–13171
Bosmali I, Lagiotis G, Haider N, Osathanunkul M, Biliaderis C, Madesis P. 2022. DNA-Based Identification of Eurasian Vicia Species Using Chloroplast and Nuclear DNA Barcodes. Plants 11(7): 947
Bouckaert R, Vaughan TG, Barido-Sottani J, Duchêne S, Fourment M, Gavryushkina A, Heled J, Jones G, Kühnert D, De Maio N, Matschiner M, Mendes FK, Müller NF, Ogilvie HA, du Plessis L, Popinga A, Rambaut A, Rasmussen D, Siveroni I, Suchard MA, Wu CH, Xie D, Zhang C, Stadler T, Drummond AJ. 2019. BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis. PLoS Comput. Biol. 15(4): e1006650. doi: 10.1371/journal.pcbi.1006650.
Fazekas AJ, Burgess KS, Kesanakurti PR, Graham SW, Newmaster SG, Husband BC, Percy DM, Hajibabaei M, Barrett SCH. 2008. Multiple multilocus DNA barcodes from the plastid genome discriminate plant species equally well. PloS One 3(7): 12
Galimberti M, De Mattia F, Sgorbati S. 2012. The advent of molecular methods in plant taxonomy: A review. Plant Biosyst. 146(3): 543–554.
Han S, Sebastin R, Wang X, Lee KJ, Cho GT, Hyun DY, Chung JW. 2021. Identification of Vicia species native to South Korea using molecular and morphological characteristics. Front. Plant Sci. 12: 14.
Hanelt P, Mettin D. 1989. Biosystematics of the genus Vicia L. (Leguminosae). Annu. Rev. Ecol. Syst. 20(1): 199–223.
Kaplan A, Ertekin AS, Gündüzler E. 2021. Molecular Phylogenetic Analysis of Vicia L.(Fabaceae) Taxa Growing in the Southeastern Anatolia Region of Turkey: Based on Internal Transcribed Spacer (ITS). Turkish Journal of Agriculture-Food Science and Technology 9(10): 1831–1839
Koima JK, Kirwa SK, Kirui J. 2023. Molecular techniques for species identification. East Afr. J. Biol. Environ. Earth Sci. 5(1): 22–32.
Kress WJ. 2017. DNA barcodes and their application to plant identification. In: Lammers TG (Ed.). Plant Systematics: An Integrated Approach (2nd ed.). CRC Press. pp. 243–260.
Li M, Gao LM, Li DZ, Zhang JQ, Yang JB. 2015. A study on DNA barcoding of Chinese Lilium species. Molecules 20(10): 19047–19062.
Manzanilla V, Borsch T, Neinhuis C. 2018. Nuclear ribosomal DNA (nrDNA) markers for phylogenetic and taxonomic studies in plants: A review. Bot. J. Linn. Soc. 187(2): 241–264.
Martínez-Arce A, De Jesús-Navarrete A, Leasi F. 2020. DNA Barcoding for Delimitation of Putative Mexican Marine Nematodes Species. Diversity 12(3):107. https://doi.org/10.3390/d12030107
Mohamad SM. 2010. A comparative systematic study of genus Vicia L. (Family: Papilionaceae) in Iraqi Kurdistan. PhD dissertation, University of Sulaimani, College of Agriculture, Department of Field Crops. 220 pp.
Raveendar S, Lee JR, Park JW, Lee GA, Jeon YA, Lee YJ, Cho GT, Ma KH, Lee SY, Chung JW. 2015. Potential use of ITS2 and matK as a two-locus DNA barcode for Identification of Vicia species. Plant Breed Biotech 3 (1): 58-66
Raveendar S, Lee JR, Shim D, Lee GA, Jeon YA, Cho GT, Ma KH, Lee SY, Sung GH, Chung JW. 2017. Comparative efficacy of four candidate DNA barcode regions for identification of Vicia species. Plant Genetic Resources 15(4): 286–295
Rouhan G, Gaudeul M. 2021. DNA barcoding: An efficient tool for unravelling plant diversity. In: Seelanan MRD (Ed.). Recent Advances in Plant Biology. Vol. 1. IntechOpen. pp. 31–52.
Scotland RW, Olmstead RG, Bennett JR. 2003. Phylogeny reconstruction: The role of morphology. Syst. Biol. 52(4): 539–548. Available at: http://www.jstor.org/stable/3651141
Shafqat M, Qasim F, Nasrullah U, Ahmad M, Hussain M, Ali H, Noreen S, Qasim MW. 2020. DNA barcoding in plants and current molecular issues. Sch. Int. J. Biochem. 3(3): 53–58.
Shehbala ES. 2021. Molecular phylogeny of the genus Vicia l.(Fabaceae) based on ITS2 and Cox1 housekeeping genes. Genus pp 30
Shiran B, Kiani S, Sehgal D, Hafizi A, Chaudhary M, Raina SN. 2014. Internal transcribed spacer sequences of nuclear ribosomal DNA resolving complex taxonomic history in the genus Vicia L. Genet. Resour. Crop Evol. 61(5): 909–925.
Simpson MG. 2019. Plant systematics (3rd ed.). Academic Press. 774 pp.
Townsend CC, Guest E. 1974. Leguminales. Ministry of Agriculture and Agrarian Reform, Republic of Iraq. 425 pp.
Velazquez E, Silva LR, Peix A. 2010. Legumes: a healthy and ecological source of flavonoids. Curr. Nutr. Food Sci. 6(2): 109–144.
Verma R, Singh HV, Pandey RK. 2022. Molecular markers in plant taxonomy: An overview. J. Pharmacogn. Phytochem. 11(1): 1–5.
Wardani IGAK, Amandita FY, de Melo Moura CC, Gailing O, Siregar IZ. 2022. Molecular taxonomy via DNA barcodes for species identification in selected genera of Fabaceae. Jurnal Pengelolaan Sumberdaya Alam Dan Lingkungan (Journal of Natural Resources and Environmental Management) 12(1): 112–122
Wei Z, Li S, Zhang W, Zhang M, Meng J. 2021. The application of molecular taxonomy in plant classification and evolution. Front. Plant Sci. 12: 730623.
Willis KJ. 2017. State of the World’s Plants 2017. Report. Royal Botanic Gardens, Kew, p.96
Wu FF, Sun W, Liu F, Gao Q, Jin M, Liu B, Wang XG. 2021. Phylogenetic relationships in Vicia subgenus Vicilla (Fabaceae) based on combined evidence from DNA sequences. Legume Res. 44(8): 882–887.